ICEberg
I. Information of IME
ICEberg ID247_IME
Name Tn6105 This is a predicted IME derived from literature
Family-
OrganismClostridium difficile R20291
Size (bp)15.8 kb
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceFN545816 (complete IME sequence in this genome)
Replicon-
Genome coordinates2059876..2075183
Putative oriT region -
Putative relaxase coordinates: 2063137..2064138; CDR20291_1768  Family:  MOBV


II. IME interaction with ICE/CIME/Plasmids

The interaction information of Tn6105 is not available.


The graph information of Tn6105 components from FN545816
Complete gene list of Tn6105 from FN545816
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1CDR20291_17592055623..2055913 [-], 291addiction module toxin, rele/stbe family
2CDR20291_17602055910..2056278 [-], 369addiction module antitoxin, relb/dinj family
3CDR20291_17612056315..2056713 [+], 399putative uncharacterized protein
4CDR20291_17622056827..2057561 [+], 735phage protein
5CDR20291_17632057726..2058421 [+], 696replicative dna helicase
6CDR20291_17642058698..2059102 [+], 405putative uncharacterized protein
7CDR20291_17652059876..2060253 [+], 378putative uncharacterized protein
8yobD2060670..2061518 [-], 849transcription regulator (yobd protein)
9CDR20291_17672061695..2062177 [+], 483putative uncharacterized protein
10CDR20291_17682063137..2064138 [+], 1002putative uncharacterized proteinRelaxase 
11CDR20291_17692064280..2064840 [+], 561putative uncharacterized protein
12CDR20291_17702064800..2066158 [+], 1359putative uncharacterized protein
13CDR20291_17712066666..2068318 [+], 1653putative uncharacterized proteinIntegrase 
14CDR20291_17722068845..2070518 [-], 1674putative uncharacterized protein
15CDR20291_17732071454..2071891 [-], 438putative uncharacterized protein
16CDR20291_17742072365..2073348 [-], 984putative uncharacterized protein
17CDR20291_17752074593..2075183 [-], 591putative uncharacterized protein
18CDR20291_17762076020..2076331 [+], 312putative conjugal transfer protein (putative single-stranded dna binding protein)
19CDR20291_17772076881..2077258 [+], 378putative uncharacterized protein
20CDR20291_17782077375..2077809 [+], 435putative uncharacterized protein
21CDR20291_17792077802..2079103 [+], 1302putative uncharacterized protein
22CDR20291_17802079197..2080003 [-], 807putative uncharacterized protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins11Fasta
(1) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(2) Brouwer MS; Warburton PJ; Roberts AP; Mullany P; Allan E (2011). Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile. PLoS One. 6(8):e23014. [PudMed:21876735]
 

Genomics & Bioinformatics Group in MML, SJTU