ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	246_IME
Name	Tn6104
Family	-
Organism	Clostridium difficile R20291
Size (bp)	15.6 kb
GC content [Genome] (%)
Insertion site	Internal site of traG (VirD4 CP) from Tn5252 related ICEs
Function	-
Species that IME can be transferred to	-
Nucleotide Sequence	FN545816 (complete IME sequence in this genome)
Replicon	-
Genome coordinates	2043677..2059102
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of Tn6104 is not available.

The graph information of Tn6104 components from FN545816

Complete gene list of Tn6104 from FN545816
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	CDR20291_1741	2040727..2041008 [+], 282	putative membrane protein precursor
2	CDR20291_1742	2041094..2042116 [+], 1023	putative conjugative transposon protein
3	CDR20291_1743	2042600..2059823 [+], 17224	putative conjugal transfer protein pseudogene
4	CDR20291_1744	2043677..2045557 [+], 1881	site-specific recombinase, resolvase family, putative	Integrase
5	CDR20291_1745	2045584..2045937 [+], 354	putative uncharacterized protein
6	CDR20291_1746	2045945..2046253 [+], 309	putative uncharacterized protein
7	CDR20291_1747	2046281..2046649 [-], 369	putative conjugative transposon regulatory protein
8	CDR20291_1748	2046924..2047667 [+], 744	two-component response regulator
9	CDR20291_1749	2047673..2048590 [+], 918	sensor protein
10	CDR20291_1750	2048689..2049651 [+], 963	putative lantibiotic abc transporter,atp-binding protein
11	CDR20291_1751	2049644..2050429 [+], 786	putative lantibiotic abc transporter, permease protein
12	CDR20291_1752	2050432..2051211 [+], 780	putative lantibiotic abc transporter, permease protein
13	CDR20291_1753	2051219..2051680 [+], 462	putative uncharacterized protein
14	CDR20291_1754	2052125..2052538 [+], 414	rna polymerase, sigma-24 subunit, ecf subfamily (ecf subfamily rna polymerase sigma-70 factor)
15	CDR20291_1755	2052640..2053092 [+], 453	sigma-24 (feci)
16	CDR20291_1756	2053067..2053564 [+], 498	rna polymerase, sigma-24 subunit, ecf subfamily
17	CDR20291_1757	2053584..2053883 [+], 300	putative uncharacterized protein
18	CDR20291_1759	2055623..2055913 [-], 291	addiction module toxin, rele/stbe family
19	CDR20291_1760	2055910..2056278 [-], 369	addiction module antitoxin, relb/dinj family
20	CDR20291_1761	2056315..2056713 [+], 399	putative uncharacterized protein
21	CDR20291_1762	2056827..2057561 [+], 735	phage protein
22	CDR20291_1763	2057726..2058421 [+], 696	replicative dna helicase
23	CDR20291_1764	2058698..2059102 [+], 405	putative uncharacterized protein
24	CDR20291_1743	2042600..2059823 [+], 17224	putative conjugal transfer protein pseudogene
25	CDR20291_1765	2059876..2060253 [+], 378	putative uncharacterized protein
26	yobD	2060670..2061518 [-], 849	transcription regulator (yobd protein)
27	CDR20291_1767	2061695..2062177 [+], 483	putative uncharacterized protein

Flanking regions

Gene may contribute to site-specific recombination

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	20	Fasta

(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]

(2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]

(3) Brouwer MS; Warburton PJ; Roberts AP; Mullany P; Allan E (2011). Genetic organisation, mobility and predicted functions of genes on integrated, mobile genetic elements in sequenced strains of Clostridium difficile. PLoS One. 6(8):e23014. [PudMed:21876735]

(4) Shoemaker NB; Wang GR; Salyers AA (2000). Multiple gene products and sequences required for excision of the mobilizable integrated Bacteroides element NBU1. J Bacteriol. 182(4):928-36. [PudMed:10648516]