ICEberg
I. Information of IME
ICEberg ID245_IME
Name Tn6031 This is a predicted IME derived from literature
Family-
OrganismSphingobacterium sp.
Size (bp)13 kb
GC content [Genome] (%)
Insertion site3′ of a tRNAPro gene
Functiontet(X) (tetracycline), aadS (streptomycin)
Species that IME can be transferred to-
Nucleotide Sequence-
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of Tn6031 is not available.

 

The gene information of Tn6031 is not available.
ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(3) Ghosh S; Sadowsky MJ; Roberts MC; Gralnick JA; LaPara TM (2009). Sphingobacterium sp. strain PM2-P1-29 harbours a functional tet(X) gene encoding for the degradation of tetracycline. J Appl Microbiol. 106(4):1336-42. [PudMed:19187139]
(4) Marrero J; Waldor MK (2007). The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 189(8):3302-5. [PudMed:17307849] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU