 ICEberg ID | 240_IME |
Name  | Tn4451  |
| Family | - |
| Organism | Clostridium perfringens |
| Size (bp) | 6338 bp |
| GC content [Genome] (%) | |
| Insertion site | Numerous sites (GA) |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | U15027 (complete IME sequence in this contig) |
| Replicon | - |
| Coordinates | 277..6614 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 5028..6293; Gene: tnpZ; Family: MOBV |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
 | ||||||
| Detailed Informatioin of the Interaction Network | ||||||
| # | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | Tn4451 | RP4 [IncP plasmid] | in trans | Escherichia coli | Escherichia coli | 9660983 |
| This is an interactioin derived from experimental literature |
The graph information of Tn4451 components from U15027 | |||||
 | |||||
| Complete gene list of Tn4451 from U15027 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | tnpX | 352..2475 [+], 2124 | TnpX | Integrase | |
| 2 | tnpV | 2400..2771 [+], 372 | TnpV | ||
| 3 | catP | 2953..3576 [+], 624 | CatP | AR | |
| 4 | tnpY | 3825..4847 [+], 1023 | TnpY | ||
| 5 | tnpZ | 5028..6293 [+], 1266 | TnpZ | Relaxase | |
| 6 | tnpW | 6413..6601 [+], 189 | TnpW | ||
 Gene may contribute to site-specific recombination |
 Gene may play role in conjugative transfer |
 Gene may be involved in adaptative function |
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
| (2) Adams V; Lyras D; Farrow KA; Rood JI (2002). The clostridial mobilisable transposons. Cell Mol Life Sci. 59(12):2033-43. [PudMed:12568329] |
| (3) Bannam TL; Crellin PK; Rood JI (1995). Molecular genetics of the chloramphenicol-resistance transposon Tn4451 from Clostridium perfringens: the TnpX site-specific recombinase excises a circular transposon molecule. Mol Microbiol. 16(3):535-51. [PudMed:7565113] |
| (4) Abraham LJ; Rood JI (1988). The Clostridium perfringens chloramphenicol resistance transposon Tn4451 excises precisely in Escherichia coli. Plasmid. 19(2):164-8. [PudMed:2901770] |