 ICEberg ID | 235_IME |
Name  | SGI2 [SGI1-J]  |
| Family | - |
| Organism | Salmonella enterica subsp. enterica serovar Emek |
| Size (bp) | 47132 bp |
| GC content [Genome] (%) | |
| Insertion site | 3'-end of the trmE |
| Function | dfrA1, floR, sul1, tet(G) |
| Species that IME can be transferred to | Escherichia coli UB1637 |
| Nucleotide Sequence | AY963803 (complete IME sequence in this contig) |
| Replicon | - |
| Coordinates | 1..47132 |
| Putative oriT region | - |
| Putative relaxase | - |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
 | ||||||
| Detailed Informatioin of the Interaction Network | ||||||
| # | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | SGI2 [SGI1-J] | pRMH760 [IncC plasmid] | in trans | Salmonella enterica | Escherichia coli | 27620651 |
| This is an interactioin derived from experimental literature |
The graph information of SGI2 [SGI1-J] components from AY963803 | |||||
 | |||||
| Complete gene list of SGI2 [SGI1-J] from AY963803 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | trmE | 447..1163 [+], 717 | TrmE | ||
| 2 | int | 1367..2584 [+], 1218 | integrase | ||
| 3 | S002 | 2581..2949 [-], 369 | S002 | ||
| 4 | rep | 3307..4260 [-], 954 | Rep | ||
| 5 | S004 | 4247..4537 [-], 291 | S004 | ||
| 6 | traN | 4624..7383 [-], 2760 | TraN | TraN_F, T4SS component | |
| 7 | S006 | 7480..8013 [-], 534 | S006 | ||
| 8 | S007 | 8016..8627 [-], 612 | S007 | ||
| 9 | S008 | 8627..8848 [-], 222 | S008 | ||
| 10 | S009 | 9023..9313 [+], 291 | S009 | ||
| 11 | S010 | 9333..9587 [-], 255 | S010 | ||
| 12 | traG | 9587..12991 [-], 3405 | TraG | TraG_F, T4SS component | |
| 13 | traH | 12995..14419 [-], 1425 | TraH | TraH_F, T4SS component | |
| 14 | S013 | 14663..15520 [+], 858 | S013 | ||
| 15 | S014 | 15517..15912 [+], 396 | S014 | ||
| 16 | S015 | 16327..16596 [-], 270 | S015 | ||
| 17 | S016 | 16674..16859 [-], 186 | S016 | ||
| 18 | S017 | 16719..16973 [+], 255 | S017 | ||
| 19 | S018 | 16870..17187 [-], 318 | S018 | ||
| 20 | S019 | 17445..17741 [-], 297 | S019 | ||
| 21 | S020 | 17745..18710 [-], 966 | S020 | ||
| 22 | S021 | 18803..19138 [+], 336 | S021 | ||
| 23 | S022 | 19050..19325 [-], 276 | S022 | ||
| 24 | intI1 | 20948..21961 [-], 1014 | IntI1 | Integrase | |
| 25 | dfrA1 | 22118..22591 [+], 474 | DfrA1 trimethoprim-insensitive dihydrofolate reductase | AR | |
| 26 | orfC | 22685..23164 [+], 480 | OrfC | ||
| 27 | qacEdelta1 | 23295..23642 [+], 348 | QacEdelta1 | ||
| 28 | cmlA9 | 24824..26038 [+], 1215 | CmlA9 chloramphenicol efflux protein | AR | |
| 29 | tetR | 26245..26871 [-], 627 | TetR | ||
| 30 | tetA(G) | 27023..28150 [+], 1128 | TetA(G) | AR | |
| 31 | orf1 | 28171..28962 [+], 792 | Orf1 | ||
| 32 | rcr3 | 29054..30538 [-], 1485 | Rcr3 | ||
| 33 | groEL/int | 30813..31466 [-], 654 | GroEL/Int | ||
| 34 | sul1 | 31568..32419 [+], 852 | Sul1; sulfonamide-insensitive dihydropteroate synthase | AR | |
| 35 | orf5 | 32547..33047 [+], 501 | Orf5 | ||
| 36 | tnp6100 | 33524..34318 [+], 795 | Tnp6100 | ||
| 37 | tniA | 34812..36494 [-], 1683 | TniA | ||
| 38 | S024 | 37241..39166 [-], 1926 | S024 | ||
| 39 | S025 | 39244..41787 [-], 2544 | S025 | ||
| 40 | S026 | 41808..42797 [-], 990 | S026 | ||
| 41 | res | 42876..43460 [-], 585 | Res | ||
| 42 | S044 | 43668..44297 [+], 630 | hypothetical protein | ||
| 43 | yidY | 44607..45794 [+], 1188 | YidY | AR | |
 Gene may contribute to site-specific recombination |
 Gene may play role in conjugative transfer |
 Gene may be involved in adaptative function |
| (1) Soliman AM; Ahmed AM; Shimamoto T; El-Domany RA; Nariya H; Shimamoto T (2017). First report in Africa of two clinical isolates of Proteus mirabilis carrying Salmonella genomic island (SGI1) variants, SGI1-PmABB and SGI1-W. Infect Genet Evol. 51:132-137. [PudMed:28359833] |
| (2) Harmer CJ; Hamidian M; Ambrose SJ; Hall RM (2016). Destabilization of IncA and IncC plasmids by SGI1 and SGI2 type Salmonella genomic islands. Plasmid. 87-88:51-57. [PudMed:27620651] |
| (3) Le Hello S; Weill FX; Guibert V; Praud K; Cloeckaert A; Doublet B (2012). Early strains of multidrug-resistant Salmonella enterica serovar Kentucky sequence type 198 from Southeast Asia harbor Salmonella genomic island 1-J variants with a novel insertion sequence. Antimicrob Agents Chemother. 56(10):5096-102. [PudMed:22802251] |
| (4) Levings RS; Djordjevic SP; Hall RM (2008). SGI2, a relative of Salmonella genomic island SGI1 with an independent origin. Antimicrob Agents Chemother. 52(7):2529-37. [PudMed:18443113] |
| (5) Levings RS; Lightfoot D; Partridge SR; Hall RM; Djordjevic SP (2005). The genomic island SGI1, containing the multiple antibiotic resistance region of Salmonella enterica serovar Typhimurium DT104 or variants of it, is widely distributed in other S. enterica serovars. J Bacteriol. 187(13):4401-9. [PudMed:15968049] |