ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	234_IME
Name	SGI1-Z
Family	-
Organism	Proteus mirabilis PM58
Size (bp)	34144 bp
GC content [Genome] (%)
Insertion site	3'-end of the trmE
Function	bla_NDM-1, bla_TEM-1, rmtB, qnrA1, tet(C), tet(J), floR, fosA3
Species that IME can be transferred to	-
Nucleotide Sequence	KP662516 (complete IME sequence in this contig)
Replicon	-
Coordinates	448..34591
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-Z is not available.

The graph information of SGI1-Z components from KP662516

Complete gene list of SGI1-Z from KP662516
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	tndF	4..465 [+], 462	tRNA modification GTPase
2	int	669..1886 [+], 1218	integrase
3	xis	1883..2251 [-], 369	excisionase
4	rep	2609..3562 [-], 954	replication protein
5	S004	3549..3839 [-], 291	hypothetical protein
6	S005	3927..6686 [-], 2760	conjugal transfer mating pair stabilization protein TraN	TraN_F, T4SS component
7	S006	6783..7316 [-], 534	putative regulator protein
8	S007	7319..7930 [-], 612	hypothetical protein
9	S008	7930..8151 [-], 222	hypothetical protein
10	S009	8326..8616 [+], 291	hypothetical protein
11	S010	8636..8890 [-], 255	hypothetical protein
12	S011	8890..12294 [-], 3405	conjugative transfer pilus assembly protein TraG	TraG_F, T4SS component
13	S012	12298..13722 [-], 1425	conjugal transfer pilus assembly protein TraH	TraH_F, T4SS component
14	S013	13966..14823 [+], 858	hypothetical protein
15	S014	14820..15215 [+], 396	hypothetical protein
16	S015	15630..15899 [-], 270	hypothetical protein
17	S016	15977..16162 [-], 186	hypothetical protein
18	S017	16022..16276 [+], 255	hypothetical protein
19	S018	16173..16490 [-], 318	hypothetical protein
20	S019	16748..17044 [-], 297	hypothetical protein
21	S020	17048..18013 [-], 966	phage integrase family protein
22	S021	18106..18441 [+], 336	hypothetical protein
23	S022	18353..18628 [-], 276	hypothetical protein
24	S023	18989..20629 [-], 1641	helicase
25	S024	20647..22572 [-], 1926	ATP-dependent endonuclease
26	S025	22650..25193 [-], 2544	subtilisin-like peptidase
27	S026	25214..26203 [-], 990	AAA ATPase, central domain protein
28	res	26282..26866 [-], 585	resolvase
29	intI1	27140..28153 [-], 1014	IntI1 integrase	Integrase
30	dfrA12	28298..28795 [+], 498	DfrA12	AR
31	-	28907..29197 [+], 291	OrfF
32	aadA2	29203..29994 [+], 792	AadA2	AR
33	qacE	30158..30505 [+], 348	QacEdelta1
34	sul	30499..31338 [+], 840	Sul1 dihydropteroate synthase	AR
35	-	31466..31966 [+], 501	Orf5
36	-	32240..32527 [+], 288	Orf6
37	tnpA	32693..33487 [+], 795	transposase
38	S044	33835..34464 [+], 630	hypothetical protein
39	hipB	34740..34997 [+], 258	transcriptional regulator

Flanking regions

Gene may contribute to site-specific recombination

Gene may play role in conjugative transfer

Gene may be involved in adaptative function

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	37	Fasta

(1) Qin S; Qi H; Zhang Q; Zhao D; Liu ZZ; Tian H; Xu L; Xu H; Zhou M; Feng X; Liu HM (2015). Emergence of Extensively Drug-Resistant Proteus mirabilis Harboring a Conjugative NDM-1 Plasmid and a Novel Salmonella Genomic Island 1 Variant, SGI1-Z. Antimicrob Agents Chemother. 59(10):6601-4. [PudMed:26195511]