ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	231_IME
Name	SGI1-W
Family	-
Organism	Proteus mirabilis PmKAF126
Size (bp)	33909 bp
GC content [Genome] (%)
Insertion site	3'-end of the trmE
Function	aadA2, lnuF, sul1
Species that IME can be transferred to	-
Nucleotide Sequence	KJ186151 (complete IME sequence in this contig)
Replicon	-
Coordinates	133..34041
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-W is not available.

The graph information of SGI1-W components from KJ186151

Complete gene list of SGI1-W from KJ186151
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	thdF	1..150 [+], 150	tRNA modification GTPase
2	int	354..1571 [+], 1218	integrase
3	xis	1568..1936 [-], 369	excisionase
4	rep	2294..3247 [-], 954	replication protein
5	-	3234..3524 [-], 291	hypothetical protein
6	-	3612..6371 [-], 2760	putative mating pair stabilization protein	TraN_F, T4SS component
7	-	6468..7001 [-], 534	putative regulator protein
8	-	7004..7615 [-], 612	hypothetical protein
9	-	7615..7836 [-], 222	hypothetical protein
10	-	8011..8301 [+], 291	hypothetical protein
11	-	8321..8575 [-], 255	hypothetical protein
12	-	8575..11979 [-], 3405	putative pilus assembly protein	TraG_F, T4SS component
13	-	11983..13407 [-], 1425	putative pilus assembly protein	TraH_F, T4SS component
14	-	13651..14508 [+], 858	hypothetical protein
15	-	14505..14900 [+], 396	hypothetical protein
16	-	15315..15584 [-], 270	hypothetical protein
17	-	15662..15847 [-], 186	hypothetical protein
18	-	15707..15961 [+], 255	hypothetical protein
19	-	15858..16175 [-], 318	hypothetical protein
20	-	16433..16729 [-], 297	hypothetical protein
21	-	16733..17698 [-], 966	putative integrase
22	-	17791..18126 [+], 336	hypothetical protein
23	-	18038..18313 [-], 276	hypothetical protein
24	-	18674..20314 [-], 1641	putative helicase
25	-	20332..22257 [-], 1926	putative exonuclease
26	-	22335..24878 [-], 2544	subtilisin-like peptidase
27	-	24899..25888 [-], 990	putative ATPase
28	res	25967..26551 [-], 585	resolvase
29	intI1	26825..27838 [-], 1014	IntI1 integrase	Integrase
30	aadA2	27984..28775 [+], 792	AadA2	AR
31	lnuF	28907..29728 [+], 822	LnuF
32	qacEdelta1	29876..30223 [+], 348	QacEdelta1
33	sul1	30217..31056 [+], 840	Sul1 dihydropteroate synthase	AR
34	-	31184..31684 [+], 501	acetyltransferase
35	-	31708..31995 [+], 288	hypothetical protein
36	-	32161..32955 [+], 795	IS6100 transposase
37	-	33303..33932 [+], 630	hypothetical protein
38	hipB	34208..34465 [+], 258	transcriptional regulator
39	hipA	34466..35779 [+], 1314	regulatory protein
40	-	36182..36585 [+], 404	membrane protein

Flanking regions

Gene may contribute to site-specific recombination

Gene may play role in conjugative transfer

Gene may be involved in adaptative function

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	36	Fasta

(1) Soliman AM; Ahmed AM; Shimamoto T; El-Domany RA; Nariya H; Shimamoto T (2017). First report in Africa of two clinical isolates of Proteus mirabilis carrying Salmonella genomic island (SGI1) variants, SGI1-PmABB and SGI1-W. Infect Genet Evol. 51:132-137. [PudMed:28359833]