ICEberg
I. Information of IME
ICEberg ID226_IME
Name SGI1-R This is a predicted IME derived from literature
Family-
OrganismSalmonella entericav subsp. enterica serovar Paratyphi B SRC181
Size (bp)-
GC content [Genome] (%)
Insertion site3'-end of the trmE
Function-
Species that IME can be transferred to-
Nucleotide SequenceFJ477835 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-R is not available.


The graph information of SGI1-R components from FJ477835
Incomplete gene list of SGI1-R from FJ477835
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1sul1808..1251 [+], 444truncated dihydropteroate synthase
2orf51775..2275 [+], 501unknown
3orf62299..2586 [+], 288unknown
4tnpA61002782..3546 [+], 765TnpA6100Integrase 
5S0443894..4523 [+], 630unknown
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins5Fasta
(1) Djordjevic SP; Cain AK; Evershed NJ; Falconer L; Levings RS; Lightfoot D; Hall RM (2009). Emergence and evolution of multiply antibiotic-resistant Salmonella enterica serovar Paratyphi B D-tartrate-utilizing strains containing SGI1. Antimicrob Agents Chemother. 53(6):2319-26. [PudMed:19332668]
 

Genomics & Bioinformatics Group in MML, SJTU