ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	218_IME
Name	SGI1-O
Family	-
Organism	Proteus mirabilis PmCAU
Size (bp)	33223 bp
GC content [Genome] (%)
Insertion site	3'-end of the trmE
Function	dfrA1, sul1
Species that IME can be transferred to	-
Nucleotide Sequence	KJ186150 (complete IME sequence in this contig)
Replicon	-
Coordinates	139..33361
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-O is not available.

The graph information of SGI1-O components from KJ186150

Complete gene list of SGI1-O from KJ186150
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	thdF	1..156 [+], 156	tRNA modification GTPase
2	int	360..1577 [+], 1218	integrase
3	xis	1574..1942 [-], 369	excisionase
4	-	2300..3253 [-], 954	replication protein
5	-	3618..6377 [-], 2760	putative mating pair stabilization protein	TraN_F, T4SS component
6	-	6474..7007 [-], 534	putative regulator protein
7	-	7010..7621 [-], 612	hypothetical protein
8	-	7621..7842 [-], 222	hypothetical protein
9	-	8017..8307 [+], 291	hypothetical protein
10	-	8327..8581 [-], 255	hypothetical protein
11	-	8581..11985 [-], 3405	putative pilus assembly protein	TraG_F, T4SS component
12	-	11989..13413 [-], 1425	putative pilus assembly protein	TraH_F, T4SS component
13	-	13657..14514 [+], 858	hypothetical protein
14	-	14511..14906 [+], 396	hypothetical protein
15	-	15321..15590 [-], 270	hypothetical protein
16	-	15668..15853 [-], 186	hypothetical protein
17	-	15713..15967 [+], 255	hypothetical protein
18	-	15864..16181 [-], 318	hypothetical protein
19	-	16439..16735 [-], 297	hypothetical protein
20	-	16739..17704 [-], 966	putative integrase
21	-	17797..18132 [+], 336	hypothetical protein
22	-	18044..18319 [-], 276	hypothetical protein
23	-	18680..20320 [-], 1641	putative helicase
24	-	20338..22263 [-], 1926	putative exonuclease
25	-	22341..24884 [-], 2544	putative subtilisin proteinase-like protein
26	-	24905..25894 [-], 990	putative ATPase
27	res	25973..26557 [-], 585	resolvase
28	intI1	26831..27844 [-], 1014	IntI1 integrase	Integrase
29	dfrA1	28001..28474 [+], 474	dihydrofolate reductase	AR
30	-	28568..29047 [+], 480	OrfC
31	qacEdelta1	29178..29525 [+], 348	QacEdelta1
32	sul1	29519..30358 [+], 840	Sul1 dihydropteroate synthase	AR
33	-	30486..30986 [+], 501	acetyltransferase
34	-	31010..31297 [+], 288	hypothetical protein
35	-	31463..32257 [+], 795	IS6100 transposase
36	-	32605..33234 [+], 630	hypothetical protein
37	hipB	33510..33767 [+], 258	transcriptional regulator
38	hipA	33768..35081 [+], 1314	regulatory protein
39	-	35484..35904 [+], 421	membrane protein

Flanking regions

Gene may contribute to site-specific recombination

Gene may play role in conjugative transfer

Gene may be involved in adaptative function

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	35	Fasta

(1) Soliman AM; Ahmed AM; Shimamoto T; El-Domany RA; Nariya H; Shimamoto T (2017). First report in Africa of two clinical isolates of Proteus mirabilis carrying Salmonella genomic island (SGI1) variants, SGI1-PmABB and SGI1-W. Infect Genet Evol. 51:132-137. [PudMed:28359833]

(2) Lei CW; Zhang AY; Liu BH; Wang HN; Guan ZB; Xu CW; Xia QQ; Cheng H; Zhang DD (2014). Molecular characteristics of Salmonella genomic island 1 in Proteus mirabilis isolates from poultry farms in China. Antimicrob Agents Chemother. 58(12):7570-2. [PudMed:25267683]

(3) Doublet B; Poirel L; Praud K; Nordmann P; Cloeckaert A (2010). European clinical isolate of Proteus mirabilis harbouring the Salmonella genomic island 1 variant SGI1-O. J Antimicrob Chemother. 65(10):2260-2. [PudMed:20682564]

(4) Boyd DA; Shi X; Hu QH; Ng LK; Doublet B; Cloeckaert A; Mulvey MR (2008). Salmonella genomic island 1 (SGI1), variant SGI1-I, and new variant SGI1-O in proteus mirabilis clinical and food isolates from China. Antimicrob Agents Chemother. 52(1):340-4. [PudMed:18025121]