ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	215_IME
Name	SGI1-L
Family	-
Organism	Proteus mirabilis 18306
Size (bp)	50339 bp
GC content [Genome] (%)
Insertion site	3'-end of the trmE
Function	tet(G)(tetracycline), floR (chloramphenicol, florfenicol), dhfrA15 (trimethoprim), bla_pse-1 (amoxicillin, clavulanate), sul1 (sulfonamides)
Species that IME can be transferred to	-
Nucleotide Sequence	LT630458 (complete IME sequence in this GenBank file)
Replicon	-
Coordinates	1.. 50339
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-L is not available.

Complete gene list of SGI1-L from LT630458
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	int	1253..2470 [+], 1218	Integrase
2	xis	2467..2835 [-], 369	Excisionase
3	rep	3193..4146 [-], 954	Replication protein
4	S004	4133..4474 [-], 342	conserved hypothetical protein
5	orfB	6235..7107 [-], 873	transposase orfB
6	orfA	7104..7448 [-], 345	transposase orfA
7	S011	7954..11358 [-], 3405	putative pilus assembly protein TraG
8	S012	11362..12786 [-], 1425	Conjugal transfer pilus assembly protein TraH
9	S013	13030..13887 [+], 858	conserved exported hypothetical protein
10	S014	13884..14279 [+], 396	conserved hypothetical protein
11	MMORPR5_0014	14499..14654 [+], 156	conserved hypothetical protein
12	S015	14695..14964 [-], 270	conserved hypothetical protein
13	S018	15239..15556 [-], 318	conserved hypothetical protein
14	S019	15814..16110 [-], 297	hypothetical protein
15	S020	16114..17079 [-], 966	Site-specific recombinase protein
16	S023	18055..19716 [-], 1662	UvrD/REP putative helicase
17	S024	19713..21638 [-], 1926	predicted ATP-dependent endonuclease
18	sgiT	21716..24259 [-], 2544	Toxin protein of the Toxin-Antitoxin system sgiAT, subtilisin-like serine protease
19	sgiA	24280..25269 [-], 990	Antitoxin protein of Toxin-Antitoxin system sgiAT, AAA ATPase
20	res	25348..25950 [-], 603	site-specific DNA recombinase
21	intI1	26207..27220 [-], 1014	Class 1 integron Integrase
22	dfrA15	27377..27850 [+], 474	Trimethoprim resistance Dihydrofolate reductase type 15	AR
23	qacEdelta1	28051..28398 [+], 348	quaternary ammonium compound-resistance protein
24	sul1delta	28392..29363 [+], 972	Dihydropteroate synthetase type-1 (fragment), Sul1delta fusion protein	AR
25	floR	29580..30794 [+], 1215	Chloramphenicol and florfenicol resistance transporter protein (Major facilitator superfamily)	AR
26	tetR	31001..31627 [-], 627	Tetracycline repressor protein TetR (class G)
27	tet(G)	31731..32906 [+], 1176	Tetracycline resistance protein Tet(G)	AR
28	MMORPR5_0033	32927..33718 [+], 792	putative LysR-type transcriptional regulator
29	MMORPR5_0034	33810..35294 [-], 1485	ISCR3 transposase
30	groEL/intI	35569..36222 [-], 654	Chaperonin/integrase fusion protein
31	blaPSE-1	36428..37294 [+], 867	Class A Beta-lactamase PSE-1	AR
32	qacEdelta1	37511..37858 [+], 348	quaternary ammonium compound-resistance protein
33	sulI	37852..38691 [+], 840	Sulfonamide resistance Dihydropteroate synthase type-1	AR
34	MMORPR5_0040	38819..39319 [+], 501	GCN5-like N-acetyltransferase, hypothetical protein
35	S044	40938..41567 [+], 630	conserved hypothetical protein
36	MMORPR5_0047	41706..42653 [-], 948	Permease of the drug/metabolite transporter (DMT) superfamily
37	MMORPR5_0048	42650..43243 [-], 594	Transcriptional regulator, TetR family
38	MMORPR5_0052	47126..48478 [-], 1353	conserved hypothetical protein
39	MMORPR5_0053	48542..49321 [-], 780	conserved exported hypothetical protein
40	MMORPR5_0054	49762..50196 [+], 435	Putative upregulator of flagellar operon UmoA (Putative exported protein)

Gene may be involved in adaptative function

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	40	Fasta

(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]

(2) Schultz E; Barraud O; Madec JY; Haenni M; Cloeckaert A; Ploy MC; Doublet B (2017). Multidrug Resistance Salmonella Genomic Island 1 in a Morganella morganii subsp. morganii Human Clinical Isolate from France. mSphere. 2(2). [PudMed:28435889]