ICEberg
I. Information of IME
ICEberg ID212_IME
Name SGI1-I This IME is derived from experimental literature
Family-
OrganismProteus mirabilis Pm107
Size (bp)42477 bp
GC content [Genome] (%)
Insertion site3'-end of the trmE
FunctionaadA2, floR, tet(G), dfrA1, sul1
Species that IME can be transferred toEscherichia coli UB1637
Nucleotide SequenceKJ186152; KU563154 (complete IME sequence in this contig)
Replicon-
Coordinates145..42621
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid


Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1SGI1-I pRMH760 [IncC plasmid] experimentalin trans Salmonella enterica Escherichia coli 27620651

experimental This is an interactioin derived from experimental literature


The graph information of SGI1-I components from KJ186152
Complete gene list of SGI1-I from KJ186152
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1thdF1..162 [+], 162tRNA modification GTPase
2int366..1583 [+], 1218integrase
3xis1580..1948 [-], 369excisionase
4rep2306..3259 [-], 954replication protein
5-3246..3536 [-], 291hypothetical protein
6-3624..6383 [-], 2760putative mating pair stabilization proteinTraN_F, T4SS component 
7-6480..7013 [-], 534putative regulator protein
8-7016..7627 [-], 612hypothetical protein
9-7627..7848 [-], 222hypothetical protein
10-8023..8313 [+], 291hypothetical protein
11-8333..8587 [-], 255hypothetical protein
12-8587..11991 [-], 3405putative pilus assembly proteinTraG_F, T4SS component 
13-11995..13419 [-], 1425putative pilus assembly proteinTraH_F, T4SS component 
14-13663..14520 [+], 858hypothetical protein
15-14517..14912 [+], 396hypothetical protein
16-15327..15596 [-], 270hypothetical protein
17-15674..15859 [-], 186hypothetical protein
18-15719..15973 [+], 255hypothetical protein
19-15870..16187 [-], 318hypothetical protein
20-16445..16741 [-], 297hypothetical protein
21-16745..17710 [-], 966putative integrase
22-17803..18138 [+], 336hypothetical protein
23-18050..18325 [-], 276hypothetical protein
24-18686..20326 [-], 1641putative helicase
25-20344..22269 [-], 1926putative exonuclease
26-22347..24890 [-], 2544putative subtilisin proteinase-like protein
27-24911..25900 [-], 990putative ATPase
28res25979..26563 [-], 585resolvase
29intI126837..27850 [-], 1014integraseIntegrase 
30aadA227996..28787 [+], 792streptomycin/spectinomycin resistance proteinAR 
31qacEdelta128951..29298 [+], 348quaternary ammonium compound and disinfectant protein
32-29292..30263 [+], 972sul1delta fusion proteinAR 
33flo30480..31694 [+], 1215chloramphenicol and florfenicol resistance proteinAR 
34tetR31901..32527 [-], 627tetracycline resistance regulator protein
35tet(G)32679..33806 [+], 1128tetracycline resistance proteinAR 
36-33827..34618 [+], 792putative LysR-type transcriptional regulator
37-34710..36194 [-], 1485putative transposase-like protein
38groEL/intI136469..37122 [-], 654GroEL/integrase fusion protein
39dfrA137279..37752 [+], 474dihydrofolate reductase IAR 
40-37846..38325 [+], 480OrfC
41qacEdelta138456..38803 [+], 348quaternary ammonium compound and disinfectant protein
42sul138797..39636 [+], 840sulfonamide resistance proteinAR 
43-39764..40264 [+], 501putative acetyltransferase
44-40288..40575 [+], 288hypothetical protein
45tnpA40741..41535 [+], 795transposase
46-41883..42512 [+], 630hypothetical protein
47hipB42788..43045 [+], 258transcriptional regulator
48hipA43046..44359 [+], 1314regulatory protein
49-44762..45204 [+], 443membrane protein

The graph information of SGI1-I components from KU563154
Complete gene list of SGI1-I from KU563154
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1trmE201..917 [+], 717TrmE
2intSGI1-I1121..2338 [+], 1218IntSGI1-I
3-2335..2703 [-], 369hypothetical protein
4rep3061..4014 [-], 954Rep
5-4001..4291 [-], 291hypothetical protein
6-4379..7138 [-], 2760hypothetical proteinTraN_F, T4SS component 
7-7235..7768 [-], 534hypothetical protein
8-7771..8382 [-], 612Hypothetical protein
9-8382..8603 [-], 222Hypothetical protein
10-8778..9068 [+], 291hypothetical protein
11-9088..9342 [-], 255hypothetical protein
12traG9342..12746 [-], 3405TraGTraG_F, T4SS component 
13traH12750..14174 [-], 1425TraHTraH_F, T4SS component 
14-14418..15275 [+], 858hypothetical protein
15-15272..15667 [+], 396hypothetical protein
16-16082..16351 [-], 270hypothetical protein
17-16429..16614 [-], 186hypothetical protein
18-16474..16728 [+], 255hypothetical protein
19-16625..16942 [-], 318hypothetical protein
20-17200..17496 [-], 297hypothetical protein
21int17500..18465 [-], 966Int
22-18558..18893 [+], 336hypothetical protein
23-18805..19080 [-], 276hypothetical protein
24-19441..21081 [-], 1641putative helicase
25-21099..23024 [-], 1926putative exonuclease
26-23102..25645 [-], 2544putative proteinase subtilisin-like protein
27-25666..26655 [-], 990putative ATPase
28resG26734..27318 [-], 585ResG
29intI127592..28605 [-], 1014IntI1 integraseIntegrase 
30aadA228763..29542 [+], 780AadA2AR 
31qacEdelta129706..30053 [+], 348QacEdelta1
32floR31235..32449 [+], 1215FloRAR 
33tetR32656..33282 [-], 627tetR
34tetA(G)33434..34561 [+], 1128tetA(G)AR 
35-34582..35373 [+], 792putative LysR-type transcriptional regulator
36rcr335465..36949 [-], 1485Rcr3
37groEL-int37224..37838 [-], 615GroEL-Int
38dfrA138010..38468 [+], 459DfrA1AR 
39-38562..39041 [+], 480hypothetical protein
40qacEdelta139172..39519 [+], 348QacEdelta1
41sul139513..40352 [+], 840Sul1AR 
42-40480..40980 [+], 501putative acetyltransferase
43-41004..41291 [+], 288hypothetical protein
44-41457..42251 [+], 795transposase
45-42599..43228 [+], 630hypothetical protein
46yidY43538..44725 [+], 1188YidYAR 
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences2Fasta
Proteins89Fasta
(1) Soliman AM; Ahmed AM; Shimamoto T; El-Domany RA; Nariya H; Shimamoto T (2017). First report in Africa of two clinical isolates of Proteus mirabilis carrying Salmonella genomic island (SGI1) variants, SGI1-PmABB and SGI1-W. Infect Genet Evol. 51:132-137. [PudMed:28359833]
(2) Harmer CJ; Hamidian M; Ambrose SJ; Hall RM (2016). Destabilization of IncA and IncC plasmids by SGI1 and SGI2 type Salmonella genomic islands. Plasmid. 87-88:51-57. [PudMed:27620651]
(3) Levings RS; Lightfoot D; Partridge SR; Hall RM; Djordjevic SP (2005). The genomic island SGI1, containing the multiple antibiotic resistance region of Salmonella enterica serovar Typhimurium DT104 or variants of it, is widely distributed in other S. enterica serovars. J Bacteriol. 187(13):4401-9. [PudMed:15968049]
 

Genomics & Bioinformatics Group in MML, SJTU