 ICEberg ID | 209_IME |
Name  | SGI1-F  |
| Family | - |
| Organism | Salmonella enterica serovar Cerro SRC5 |
| Size (bp) | - |
| GC content [Genome] (%) | |
| Insertion site | 3'-end of the trmE |
| Function | dfrA1, floR, sul1, tet(G), blaP1 |
| Species that IME can be transferred to | Escherichia coli UB1637 |
| Nucleotide Sequence | KU847976 (complete IME sequence in this contig) |
| Replicon | - |
| Coordinates | 915..43564 |
| Putative oriT region | - |
| Putative relaxase | - |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
 | ||||||
| Detailed Informatioin of the Interaction Network | ||||||
| # | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | SGI1-F | pN418 [IncA/C plasmid] | in trans | Salmonella enterica | Escherichia coli | 21187963 |
| 2 | SGI1-F | pAM04528 [IncA/C plasmid] | in trans | Salmonella enterica | Escherichia coli | 21187963 |
| 3 | SGI1-F | pR55 [IncA/C plasmid] | in trans | Salmonella enterica | Escherichia coli | 21187963 |
| 4 | SGI1-F | pRMH760 [IncC plasmid] | in trans | Salmonella enterica | Escherichia coli | 27620651 |
| This is an interactioin derived from experimental literature |
The graph information of SGI1-F components from KU847976 | |||||
 | |||||
| Complete gene list of SGI1-F from KU847976 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | trmE | 201..917 [+], 717 | TrmE | ||
| 2 | intSGI1-F | 1121..2338 [+], 1218 | IntSGI1-F | ||
| 3 | S002 | 2335..2703 [-], 369 | S002 | ||
| 4 | rep | 3061..4014 [-], 954 | Rep | ||
| 5 | S004 | 4001..4291 [-], 291 | S004 | ||
| 6 | S005 | 4379..7138 [-], 2760 | S005 | TraN_F, T4SS component | |
| 7 | S006 | 7235..7768 [-], 534 | S006 | ||
| 8 | S007 | 7771..8382 [-], 612 | S007 | ||
| 9 | S008 | 8382..8603 [-], 222 | S008 | ||
| 10 | S009 | 8778..9068 [+], 291 | S009 | ||
| 11 | S010 | 9088..9342 [-], 255 | S010 | ||
| 12 | traG | 9342..12746 [-], 3405 | TraG | TraG_F, T4SS component | |
| 13 | traH | 12750..14174 [-], 1425 | TraH | TraH_F, T4SS component | |
| 14 | S013 | 14418..15275 [+], 858 | S013 | ||
| 15 | S014 | 15272..15667 [+], 396 | S014 | ||
| 16 | S015 | 16082..16351 [-], 270 | S015 | ||
| 17 | S016 | 16429..16614 [-], 186 | S016 | ||
| 18 | S017 | 16474..16728 [+], 255 | S017 | ||
| 19 | S018 | 16625..16942 [-], 318 | S018 | ||
| 20 | S019 | 17200..17496 [-], 297 | S019 | ||
| 21 | int | 17500..18465 [-], 966 | Int | ||
| 22 | S021 | 18558..18893 [+], 336 | S021 | ||
| 23 | S022 | 18805..19080 [-], 276 | S022 | ||
| 24 | S023 | 19441..21081 [-], 1641 | S023 | ||
| 25 | S024 | 21099..23024 [-], 1926 | S024 | ||
| 26 | S025 | 23102..25645 [-], 2544 | S025 | ||
| 27 | S026 | 25666..26655 [-], 990 | S026 | ||
| 28 | resG | 26734..27318 [-], 585 | ResG | ||
| 29 | intI1 | 27592..28605 [-], 1014 | IntI1 integrase | Integrase | |
| 30 | dfrA1 | 28777..29235 [+], 459 | DfrA1 trimethoprim-insensitive dihydrofolate reductase | AR | |
| 31 | orfC | 29329..29808 [+], 480 | orfC | ||
| 32 | qacEdelta1 | 29939..30286 [+], 348 | QacEdelta1 | ||
| 33 | floR | 31468..32682 [+], 1215 | FloR | AR | |
| 34 | tetR | 32889..33515 [-], 627 | TetR | ||
| 35 | tetA(G) | 33667..34794 [+], 1128 | TetA(G) | AR | |
| 36 | - | 34815..35606 [+], 792 | putative LysR-type transcriptional regulator | ||
| 37 | rcr3 | 35698..37182 [-], 1485 | Rcr3 | ||
| 38 | groEL-intI | 37457..38110 [-], 654 | GroEL-IntI1 | ||
| 39 | blaP1 | 38268..39182 [+], 915 | BlaP1 | AR | |
| 40 | qacEdelta1 | 39399..39746 [+], 348 | QacEdelta1 | ||
| 41 | sul1 | 39740..40579 [+], 840 | Sul1 | AR | |
| 42 | - | 40707..41207 [+], 501 | orf5 | ||
| 43 | - | 41231..41518 [+], 288 | orf | ||
| 44 | tnp6100 | 41684..42478 [+], 795 | Tnp6100 | ||
| 45 | S044 | 42826..43455 [+], 630 | S044 | ||
| 46 | yidY | 43765..44952 [+], 1188 | YidY | AR | |
 Flanking regions |
 Gene may contribute to site-specific recombination |
 Gene may play role in conjugative transfer |
 Gene may be involved in adaptative function |
| (1) Schultz E; Barraud O; Madec JY; Haenni M; Cloeckaert A; Ploy MC; Doublet B (2017). Multidrug Resistance Salmonella Genomic Island 1 in a Morganella morganii subsp. morganii Human Clinical Isolate from France. mSphere. 2(2). [PudMed:28435889] |
| (2) Harmer CJ; Hamidian M; Ambrose SJ; Hall RM (2016). Destabilization of IncA and IncC plasmids by SGI1 and SGI2 type Salmonella genomic islands. Plasmid. 87-88:51-57. [PudMed:27620651] |
| (3) Douard G; Praud K; Cloeckaert A; Doublet B (2010). The Salmonella genomic island 1 is specifically mobilized in trans by the IncA/C multidrug resistance plasmid family. PLoS One. 5(12):e15302. [PudMed:21187963] |