I. Information of IME
ICEberg ID209_IME
Name SGI1-F This IME is derived from experimental literature
OrganismSalmonella enterica serovar Cerro SRC5
Size (bp)-
GC content [Genome] (%)
Insertion site3'-end of the trmE
FunctiondfrA1, floR, sul1, tet(G), blaP1
Species that IME can be transferred toEscherichia coli UB1637
Nucleotide SequenceKU847976 (complete IME sequence in this contig)
Putative oriT region -
Putative relaxase -

II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid

Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1SGI1-F pN418 [IncA/C plasmid] experimentalin trans Salmonella enterica Escherichia coli 21187963
2SGI1-F pAM04528 [IncA/C plasmid] experimentalin trans Salmonella enterica Escherichia coli 21187963
3SGI1-F pR55 [IncA/C plasmid] experimentalin trans Salmonella enterica Escherichia coli 21187963
4SGI1-F pRMH760 [IncC plasmid] experimentalin trans Salmonella enterica Escherichia coli 27620651

experimental This is an interactioin derived from experimental literature

The graph information of SGI1-F components from KU847976
Complete gene list of SGI1-F from KU847976
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1trmE201..917 [+], 717TrmE
2intSGI1-F1121..2338 [+], 1218IntSGI1-F
3S0022335..2703 [-], 369S002
4rep3061..4014 [-], 954Rep
5S0044001..4291 [-], 291S004
6S0054379..7138 [-], 2760S005TraN_F, T4SS component 
7S0067235..7768 [-], 534S006
8S0077771..8382 [-], 612S007
9S0088382..8603 [-], 222S008
10S0098778..9068 [+], 291S009
11S0109088..9342 [-], 255S010
12traG9342..12746 [-], 3405TraGTraG_F, T4SS component 
13traH12750..14174 [-], 1425TraHTraH_F, T4SS component 
14S01314418..15275 [+], 858S013
15S01415272..15667 [+], 396S014
16S01516082..16351 [-], 270S015
17S01616429..16614 [-], 186S016
18S01716474..16728 [+], 255S017
19S01816625..16942 [-], 318S018
20S01917200..17496 [-], 297S019
21int17500..18465 [-], 966Int
22S02118558..18893 [+], 336S021
23S02218805..19080 [-], 276S022
24S02319441..21081 [-], 1641S023
25S02421099..23024 [-], 1926S024
26S02523102..25645 [-], 2544S025
27S02625666..26655 [-], 990S026
28resG26734..27318 [-], 585ResG
29intI127592..28605 [-], 1014IntI1 integraseIntegrase 
30dfrA128777..29235 [+], 459DfrA1 trimethoprim-insensitive dihydrofolate reductaseAR 
31orfC29329..29808 [+], 480orfC
32qacEdelta129939..30286 [+], 348QacEdelta1
33floR31468..32682 [+], 1215FloRAR 
34tetR32889..33515 [-], 627TetR
35tetA(G)33667..34794 [+], 1128TetA(G)AR 
36-34815..35606 [+], 792putative LysR-type transcriptional regulator
37rcr335698..37182 [-], 1485Rcr3
38groEL-intI37457..38110 [-], 654GroEL-IntI1
39blaP138268..39182 [+], 915BlaP1AR 
40qacEdelta139399..39746 [+], 348QacEdelta1
41sul139740..40579 [+], 840Sul1AR 
42-40707..41207 [+], 501orf5
43-41231..41518 [+], 288orf
44tnp610041684..42478 [+], 795Tnp6100
45S04442826..43455 [+], 630S044
46yidY43765..44952 [+], 1188YidYAR 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
(1) Schultz E; Barraud O; Madec JY; Haenni M; Cloeckaert A; Ploy MC; Doublet B (2017). Multidrug Resistance Salmonella Genomic Island 1 in a Morganella morganii subsp. morganii Human Clinical Isolate from France. mSphere. 2(2). [PudMed:28435889]
(2) Harmer CJ; Hamidian M; Ambrose SJ; Hall RM (2016). Destabilization of IncA and IncC plasmids by SGI1 and SGI2 type Salmonella genomic islands. Plasmid. 87-88:51-57. [PudMed:27620651]
(3) Douard G; Praud K; Cloeckaert A; Doublet B (2010). The Salmonella genomic island 1 is specifically mobilized in trans by the IncA/C multidrug resistance plasmid family. PLoS One. 5(12):e15302. [PudMed:21187963]