ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	206_IME
Name	SGI1-B
Family	-
Organism	Salmonella enterica DT104 S/960725
Size (bp)	33178 bp
GC content [Genome] (%)
Insertion site	3'-end of the trmE
Function	pse-1 (ASu) cassette, sul1
Species that IME can be transferred to	-
Nucleotide Sequence	KU987430 (complete IME sequence in this contig)
Replicon	-
Coordinates	146..33323
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-B is not available.

The graph information of SGI1-B components from KU987430

Complete gene list of SGI1-B from KU987430
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	thdF	1..163 [+], 163	tRNA modification GTPase
2	int	367..1584 [+], 1218	integrase
3	xis	1581..1949 [-], 369	excisionase
4	rep	2307..3260 [-], 954	replication protein
5	S004	3247..3537 [-], 291	hypothetical protein
6	-	3625..6384 [-], 2760	putative mating pair stabilization protein	TraN_F, T4SS component
7	-	6481..7014 [-], 534	putative regulator protein
8	-	7017..7628 [-], 612	hypothetical protein
9	-	7628..7849 [-], 222	hypothetical protein
10	-	8024..8314 [+], 291	hypothetical protein
11	-	8334..8588 [-], 255	hypothetical protein
12	-	8588..11992 [-], 3405	putative pilus assembly protein	TraG_F, T4SS component
13	-	11996..13420 [-], 1425	putative pilus assembly protein	TraH_F, T4SS component
14	-	13664..14521 [+], 858	hypothetical protein
15	-	14518..14913 [+], 396	hypothetical protein
16	-	15328..15597 [-], 270	hypothetical protein
17	-	15675..15860 [-], 186	hypothetical protein
18	-	15720..15974 [+], 255	hypothetical protein
19	-	15871..16188 [-], 318	hypothetical protein
20	-	16446..16742 [-], 297	hypothetical protein
21	-	16746..17711 [-], 966	putative integrase
22	-	17804..18139 [+], 336	hypothetical protein
23	-	18051..18326 [-], 276	hypothetical protein
24	-	18687..20327 [-], 1641	putative helicase
25	-	20345..22270 [-], 1926	putative exonuclease
26	-	22348..24891 [-], 2544	putative subtilisin proteinase-like protein
27	-	24912..25901 [-], 990	putative ATPase
28	res	25980..26564 [-], 585	resolvase
29	intI1	26838..27851 [-], 1014	IntI1 integrase	Integrase
30	blaPSE-1	28057..28923 [+], 867	beta-lactamase	AR
31	qacEdelta1	29140..29487 [+], 348	QacEdelta1
32	sul1	29481..30320 [+], 840	dihydropteroate synthase	AR
33	-	30448..30948 [+], 501	acetyltransferase
34	-	30972..31259 [+], 288	hypothetical protein
35	-	31425..32219 [+], 795	IS6100 transposase
36	S044	32567..33196 [+], 630	hypothetical protein
37	hipB	33472..33729 [+], 258	transcriptional regulator
38	hipA	33730..35043 [+], 1314	regulatory protein
39	PMI3124	35446..35500 [+], 55	membrane protein

Flanking regions

Gene may contribute to site-specific recombination

Gene may play role in conjugative transfer

Gene may be involved in adaptative function

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	35	Fasta

(1) Schultz E; Barraud O; Madec JY; Haenni M; Cloeckaert A; Ploy MC; Doublet B (2017). Multidrug Resistance Salmonella Genomic Island 1 in a Morganella morganii subsp. morganii Human Clinical Isolate from France. mSphere. 2(2). [PudMed:28435889]

(2) Boyd D; Cloeckaert A; Chaslus-Dancla E; Mulvey MR (2002). Characterization of variant Salmonella genomic island 1 multidrug resistance regions from serovars Typhimurium DT104 and Agona. Antimicrob Agents Chemother. 46(6):1714-22. [PudMed:12019080]

(3) Boyd D; Peters GA; Cloeckaert A; Boumedine KS; Chaslus-Dancla E; Imberechts H; Mulvey MR (2001). Complete nucleotide sequence of a 43-kilobase genomic island associated with the multidrug resistance region of Salmonella enterica serovar Typhimurium DT104 and its identification in phage type DT120 and serovar Agona. J Bacteriol. 183(19):5725-32. [PudMed:11544236]