ICEberg
I. Information of IME
ICEberg ID201_IME
Name SGI1-K3 This is a predicted IME derived from literature
Family-
OrganismSalmonella enterica subsp. enterica serovar Kentucky
Size (bp)-
GC content [Genome] (%)
Insertion site3'-end of the trmE
FunctionblaTEM-1, strA, strB, pecM, tet(A), tetR, mer, sul1, aadA7,
Species that IME can be transferred to-
Nucleotide SequenceEU664604 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-K3 is not available.


The graph information of SGI1-K3 components from EU664604
Incomplete gene list of SGI1-K3 from EU664604
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1S0261..751 [-], 751putative ATPase
2tnpA1191..1764 [+], 574putative transposase proteinIntegrase 
3tnpA2163..2698 [-], 536putative transposase protein
 
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins3Fasta
(1) Doublet B; Praud K; Bertrand S; Collard JM; Weill FX; Cloeckaert A (2008). Novel insertion sequence- and transposon-mediated genetic rearrangements in genomic island SGI1 of Salmonella enterica serovar Kentucky. Antimicrob Agents Chemother. 52(10):3745-54. [PudMed:18676889]
 

Genomics & Bioinformatics Group in MML, SJTU