ICEberg
I. Information of IME
ICEberg ID200_IME
Name SGI1-K2 This is a predicted IME derived from literature
Family-
OrganismSalmonella enterica subsp. enterica serovar Kentucky
Size (bp)-
GC content [Genome] (%)
Insertion site3'-end of the trmE
Functionsul1, mer, tetR, tet(A), tnpA, strB, tnpR, blaTEM-1
Species that IME can be transferred to-
Nucleotide SequenceEU664603 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of SGI1-K2 is not available.


The graph information of SGI1-K2 components from EU664603
Incomplete gene list of SGI1-K2 from EU664603
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1tnpA338..1042 [-], 705putative transposase protein
2qacEdelta11562..1909 [+], 348QacEdelta1
3sul11903..2480 [+], 578sulfonamide insensitive dihydropteroate synthaseAR 
4strB2581..2643 [-], 63aminoglycoside phosphotransferase; streptomycin resistance
5tnpA3607..4180 [+], 574putative transposase proteinIntegrase 
 
integrase Gene may contribute to site-specific recombination
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins5Fasta
(1) Doublet B; Praud K; Bertrand S; Collard JM; Weill FX; Cloeckaert A (2008). Novel insertion sequence- and transposon-mediated genetic rearrangements in genomic island SGI1 of Salmonella enterica serovar Kentucky. Antimicrob Agents Chemother. 52(10):3745-54. [PudMed:18676889]
 

Genomics & Bioinformatics Group in MML, SJTU