ICEberg
I. Information of IME
ICEberg ID191_IME
Name MTnPi9 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s 17
Size (bp)17652 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceNC_017861 (complete IME sequence in this genome)
Replicon-
Genome coordinates1236398..1254049
Putative oriT region -
Putative relaxase coordinates: 1251836..1252816; PIN17_RS07750  Family:  -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi9 is not available.


The graph information of MTnPi9 components from NC_017861
Complete gene list of MTnPi9 from NC_017861
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIN17_RS076651231653..1232120 [-], 468hypothetical protein
2PIN17_RS076701232177..1233040 [-], 864RNA polymerase sigma factor RpoD/SigA
3PIN17_RS076751233257..1233754 [-], 498gliding motility protein GldH
4PIN17_RS076801233747..1235021 [-], 1275hypothetical protein
5PIN17_RS076851235107..1236228 [-], 1122DNA polymerase III subunit delta
6PIN17_RS076901236893..1238122 [+], 1230site-specific integraseIntegrase 
7PIN17_RS077001239392..1239796 [+], 405hypothetical protein
8PIN17_RS077051239993..1241300 [-], 1308hypothetical protein
9PIN17_RS077101241302..1242081 [-], 780outer membrane lipoprotein-sorting protein
10PIN17_RS077151242093..1244510 [-], 2418membrane protein
11PIN17_RS077201244756..1246471 [-], 1716ABC transporter ATP-binding protein
12PIN17_RS077251246497..1248251 [-], 1755ABC transporter ATP-binding protein
13PIN17_RS077301248284..1248898 [-], 615TetR/AcrR family transcriptional regulator
14PIN17_RS120601248886..1249092 [-], 207hypothetical protein
15PIN17_RS077351249211..1249501 [-], 291helix-turn-helix domain-containing protein
16PIN17_RS077401249498..1249788 [-], 291DNA-binding protein
17PIN17_RS077451250194..1251627 [+], 1434virulence-associated protein E
18PIN17_RS077501251836..1252816 [+], 981mobilization proteinRelaxase 
19PIN17_RS077551252821..1253300 [+], 480DUF3408 domain-containing protein
20PIN17_RS077601253618..1254049 [+], 432hypothetical protein
21PIN17_RS077701255450..1258260 [-], 2811insulinase family protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins16Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU