ICEberg
I. Information of IME
ICEberg ID189_IME
Name MTnPi7 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s 17
Size (bp)12980 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceNC_017861 (complete IME sequence in this genome)
Replicon-
Genome coordinates922037..935016
Putative oriT region -
Putative relaxase coordinates: 922275..923354; PIN17_RS06215  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi7 is not available.


The graph information of MTnPi7 components from NC_017861
Complete gene list of MTnPi7 from NC_017861
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIN17_RS06185917289..917615 [+], 327hypothetical protein
2PIN17_RS06190917797..918039 [+], 243hypothetical protein
3PIN17_RS06195918109..918939 [+], 831DNA methyltransferase
4PIN17_RS06200918965..919603 [+], 639thymidylate synthase
5PIN17_RS06205919718..921994 [+], 2277hypothetical protein
6PIN17_RS06210922000..922230 [+], 231hypothetical protein
7PIN17_RS06215922275..923354 [-], 1080mobilization proteinRelaxase 
8PIN17_RS06220923338..923769 [-], 432hypothetical protein
9PIN17_RS06225924121..924582 [-], 462DUF3408 domain-containing protein
10PIN17_RS06230924587..925549 [-], 963mobilization protein
11PIN17_RS06235925730..927166 [-], 1437virulence-associated protein E
12PIN17_RS06240927579..927869 [+], 291DNA-binding protein
13PIN17_RS06245927866..928171 [+], 306DNA-binding protein
14PIN17_RS06250928276..929181 [-], 906AraC family transcriptional regulator
15PIN17_RS06255929301..929753 [+], 453cupin domain-containing protein
16PIN17_RS06260929767..930531 [+], 765MBL fold metallo-hydrolase
17PIN17_RS06265930549..931451 [+], 903radical SAM mobile pair protein B
18PIN17_RS06270931672..932076 [-], 405hypothetical protein
19PIN17_RS06275932073..932267 [-], 195integrase
20PIN17_RS06280932559..933788 [+], 1230site-specific integraseIntegrase 
21PIN17_RS06285933814..935016 [+], 1203site-specific integraseIntegrase 
22PIN17_RS06290935023..935385 [+], 363hypothetical protein
23PIN17_RS06295935511..935918 [-], 408nuclear transport factor 2 family protein
24PIN17_RS06300936051..936365 [+], 315transcriptional regulator
25PIN17_RS06305936454..937083 [+], 630hypothetical protein
26PIN17_RS06310937111..937959 [+], 849AraC family transcriptional regulator
27PIN17_RS06315938056..939414 [+], 1359MATE family efflux transporter
28PIN17_RS06320939408..939677 [+], 270hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins16Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU