ICEberg
I. Information of IME
ICEberg ID188_IME
Name MTnPi6 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s OMA14
Size (bp)5937-6175 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceAP014597; AP014598 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi6 is not available.


The graph information of MTnPi6 components from AP014597
Incomplete gene list of MTnPi6 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_09691072547..1073359 [+], 813putative multi-copper polyphenol oxidoreductase
2PIOMA14_I_09701073463..1073801 [-], 339probable MerR family transcriptional regulator
3PIOMA14_I_09711073892..1076558 [+], 2667alanyl-tRNA synthetase
4PIOMA14_I_09721076612..1076827 [+], 216hypothetical protein
5PIOMA14_I_09731077055..1078176 [-], 1122relaxase/mobilization nucleaseRelaxase 
6PIOMA14_I_09741078166..1078591 [-], 426conserved hypothetical protein
7PIOMA14_I_09751078747..1078851 [+], 105hypothetical protein
8PIOMA14_I_09761078974..1079408 [-], 435conserved hypothetical protein with DUF3408 domain
9PIOMA14_I_09771079411..1080055 [-], 645probable partial DNA primase
10PIOMA14_I_09781080108..1080386 [-], 279probable partial DNA primase
11PIOMA14_I_09791080568..1081869 [-], 1302virulence-associated protein E
12PIOMA14_I_09801082331..1082459 [+], 129conserved hypothetical protein
13PIOMA14_I_09811082482..1082772 [+], 291conserved hypothetical protein
14PIOMA14_I_09821082769..1083014 [+], 246conserved hypothetical protein
15PIOMA14_I_09831083154..1083630 [+], 477probable DNA mismatch endonuclease Vsr
16PIOMA14_I_09841083937..1084221 [-], 285hypothetical protein
17PIOMA14_I_09851084380..1086743 [-], 2364abortive phage infection protein
18PIOMA14_I_09861086740..1087594 [-], 855conserved hypothetical protein with DUF4420

The graph information of MTnPi6 components from AP014598
Incomplete gene list of MTnPi6 from AP014598
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_II_0300362209..364095 [+], 1887conserved hypothetical protein with SMC-N domain
2PIOMA14_II_0301364097..364999 [+], 903hypothetical protein with HTH5 domain
3PIOMA14_II_0302364989..365921 [-], 933transposase in ISPi1
4PIOMA14_II_0303366432..366722 [-], 291conserved hypothetical protein with HTH17 domain
5PIOMA14_II_0304366735..367037 [-], 303hypothetical protein
6PIOMA14_II_0305367551..368915 [+], 1365virulence-associated protein E
7PIOMA14_II_0306369097..369375 [+], 279hypothetical protein
8PIOMA14_II_0307369428..370072 [+], 645partial probable DNA primase
9PIOMA14_II_0308370075..370509 [+], 435conserved hypothetical protein with DUF3408 domain
10PIOMA14_II_0309370892..371317 [+], 426conserved hypothetical protein
11PIOMA14_II_0310371307..372368 [+], 1062relaxase/mobilization nucleaseRelaxase 
12PIOMA14_II_0311372289..372663 [+], 375hypothetical protein
13PIOMA14_II_0312372888..374012 [+], 1125conserved hypothetical protein with xylanase domain
14PIOMA14_II_0313374036..374824 [+], 789conserved hypothetical protein with OMP-b-brl domain
15PIOMA14_II_0314375098..375661 [+], 564conserved hypothetical protein with DKNYY domain
16PIOMA14_II_0315376121..376366 [+], 246hypothetical protein
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences2Fasta
Proteins18Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU