ICEberg
I. Information of IME
ICEberg ID187_IME
Name MTnPi5 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s OMA14
Size (bp)7487 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceAP014598 (complete IME sequence in this genome)
Replicon-
Genome coordinates599589..607075
Putative oriT region -
Putative relaxase coordinates: 600926..601852; PIOMA14_II_0539  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi5 is not available.


The graph information of MTnPi5 components from AP014598
Complete gene list of MTnPi5 from AP014598
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_II_0529595246..597231 [-], 1986conserved hypothetical protein
2PIOMA14_II_0530597322..597426 [+], 105conserved hypothetical protein
3PIOMA14_II_0531597488..597691 [-], 204hypothetical protein
4PIOMA14_II_0532597739..597843 [+], 105hypothetical protein
5PIOMA14_II_0533598009..598098 [+], 90hypothetical protein
6PIOMA14_II_0534598049..598357 [+], 309hypothetical protein with DUF3853 domain
7PIOMA14_II_0535598354..599406 [+], 1053conserved hypothetical protein
8PIOMA14_II_0536599589..600479 [+], 891putative DNA primase
9PIOMA14_II_0537600404..600598 [+], 195partial mobilization protein
10PIOMA14_II_0538600582..600929 [+], 348probable mobilization protein
11PIOMA14_II_0539600926..601852 [+], 927putative relaxase/mobilization nucleaseRelaxase 
12PIOMA14_II_0540601874..602533 [+], 660conserved hypothetical protein
13PIOMA14_II_0541602688..603971 [-], 1284conserved hypothetical protein with DUF1016 domain
14PIOMA14_II_0542603984..605315 [-], 1332integrase
15PIOMA14_II_0543605590..605769 [+], 180hypothetical protein
16PIOMA14_II_0544605843..607075 [+], 1233integraseIntegrase 
17PIOMA14_II_0545607101..607568 [+], 468conserved hypothetical protein with DUF1896 domain
18PIOMA14_II_0546607707..608054 [+], 348hypothetical protein
19PIOMA14_II_0547608461..608667 [+], 207conserved hypothetical protein
20PIOMA14_II_0548609137..609970 [-], 834hypothetical protein
21PIOMA14_II_0549610162..610305 [+], 144hypothetical protein
22PIOMA14_II_0550610274..610387 [-], 114conserved hypothetical protein
23PIOMA14_II_0551610504..611010 [-], 507hypothetical protein
24PIOMA14_II_0552611148..611378 [+], 231hypothetical protein
25PIOMA14_II_0553611478..611969 [-], 492probable lysozyme
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins9Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU