ICEberg
I. Information of IME
ICEberg ID186_IME
Name MTnPi4 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s OMA14
Size (bp)12401 bp
GC content [Genome] (%)
Insertion siteGGGTCTGGGTAC
Function-
Species that IME can be transferred to-
Nucleotide SequenceAP014597 (complete IME sequence in this genome)
Replicon-
Genome coordinates1333265..1345665
Putative oriT region -
Putative relaxase coordinates: 1340291..1341211; PIOMA14_I_1216  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi4 is not available.


The graph information of MTnPi4 components from AP014597
Complete gene list of MTnPi4 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_12051328650..1330809 [+], 2160conserved hypothetical protein
2PIOMA14_I_12061330915..1331235 [+], 321conserved hypothetical protein with DUF59 domain
3PIOMA14_I_12071331270..1332034 [+], 765UDP-2,3-diacylglucosamine hydrolase
4PIOMA14_I_12081332591..1333115 [+], 525putative DNA mismatch endonuclease Vsr
5PIOMA14_I_12091333329..1333499 [-], 171hypothetical protein
6PIOMA14_I_12101333521..1334744 [+], 1224integraseIntegrase 
7PIOMA14_I_12111334852..1335841 [+], 990probable ATPase
8PIOMA14_I_12121335865..1338471 [-], 2607probable peptidase subtilase family
9PIOMA14_I_12131338838..1339428 [+], 591conserved hypothetical protein with HATPase-c domain
10PIOMA14_I_12141339454..1339573 [+], 120hypothetical protein
11PIOMA14_I_12151339632..1340279 [-], 648conserved hypothetical protein
12PIOMA14_I_12161340291..1341211 [-], 921probable relaxaseRelaxase 
13PIOMA14_I_12171341208..1341702 [-], 495hypothetical protein
14PIOMA14_I_12181341705..1342616 [-], 912DNA primase
15PIOMA14_I_12191342657..1342830 [+], 174hypothetical protein
16PIOMA14_I_12201342884..1344074 [-], 1191conserved hypothetical protein
17PIOMA14_I_12211344078..1344371 [-], 294probable excisionase
18PIOMA14_I_12221344496..1345416 [-], 921conserved hypothetical protein
19PIOMA14_I_12231346231..1346656 [+], 426hypothetical protein with DUF2147 domain
20PIOMA14_I_12241346874..1347968 [+], 1095mannose-1-phosphate guanylyltransferase
21PIOMA14_I_12251348159..1348557 [-], 399probable histidine triad (HIT) family protein
22PIOMA14_I_12261348582..1349052 [-], 471putative transcription elongation factor GreA
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins14Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU