ICEberg
I. Information of IME
ICEberg ID185_IME
Name MTnPi3 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s 17
Size (bp)18468 bp
GC content [Genome] (%)
Insertion siteTTAC NNNNN A/G A/G
Function-
Species that IME can be transferred to-
Nucleotide SequenceAP014597 (complete IME sequence in this genome)
Replicon-
Genome coordinates990637..1009104
Putative oriT region -
Putative relaxase coordinates: 990930..992009; PIOMA14_I_0897  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi3 is not available.


The graph information of MTnPi3 components from AP014597
Complete gene list of MTnPi3 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_0894987431..988432 [+], 1002conserved hypothetical protein with virulence-RhuM domain
2PIOMA14_I_0895988728..990479 [+], 1752conserved hypothetical protein with peptidase-M6 domain
3PIOMA14_I_0896990729..990845 [+], 117conserved hypothetical protein
4PIOMA14_I_0897990930..992009 [-], 1080probable relaxase/mobilization nucleaseRelaxase 
5PIOMA14_I_0898991993..992424 [-], 432conserved hypothetical protein
6PIOMA14_I_0899992787..993248 [-], 462conserved hypothetical protein with DUF3408 domain
7PIOMA14_I_0900993253..994221 [-], 969probable DNA primase
8PIOMA14_I_0901994471..994617 [+], 147hypothetical protein
9PIOMA14_I_0902994595..994717 [-], 123partial ISPsy14 transposition helper protein
10PIOMA14_I_0903994671..995015 [+], 345hypothetical protein
11PIOMA14_I_0904994942..995172 [+], 231hypothetical protein
12PIOMA14_I_0905995239..995445 [-], 207hypothetical protein
13PIOMA14_I_0906995990..996049 [+], 60conserved hypothetical protein
14PIOMA14_I_0907996211..996522 [+], 312hypothetical protein
15PIOMA14_I_0908996810..997424 [+], 615probable TetR family transcriptional regulator
16PIOMA14_I_0909997457..999211 [+], 1755ABC transporter ATP-binding protein
17PIOMA14_I_0910999237..1000964 [+], 1728ABC transporter ATP-binding protein
18PIOMA14_I_09111001290..1003668 [+], 2379conserved hypothetical protein with MMPL domain
19PIOMA14_I_09121003698..1004477 [+], 780conserved hypothetical protein with DUF1329
20PIOMA14_I_09131004479..1005786 [+], 1308conserved hypothetical protein
21PIOMA14_I_09141005851..1006255 [-], 405conserved hypothetical protein
22PIOMA14_I_09151006252..1007496 [-], 1245integraseIntegrase 
23PIOMA14_I_09161007509..1008738 [-], 1230integrase
24PIOMA14_I_09171008781..1008951 [+], 171conserved hypothetical protein
25PIOMA14_I_09181009017..1009151 [+], 135hypothetical protein
26PIOMA14_I_09191009417..1010598 [+], 1182bifunctional purine biosynthesis protein
27PIOMA14_I_09201010636..1010821 [+], 186hypothetical protein
28PIOMA14_I_09211010978..1011433 [+], 456conserved hypothetical protein
29PIOMA14_I_09221011597..1012643 [+], 10473-dehydroquinate synthase
30PIOMA14_I_09231012701..1013717 [-], 1017O-succinylbenzoic acid-CoA ligase

The graph information of MTnPi3 components from AP014597
Complete gene list of MTnPi3 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_15051668422..1669990 [-], 1569conserved hypothetical protein
2PIOMA14_I_15061670687..1670782 [+], 96conserved hypothetical protein
3PIOMA14_I_15071670946..1671053 [+], 108conserved hypothetical protein
4PIOMA14_I_15081671134..1672363 [+], 1230integrase
5PIOMA14_I_15091672376..1673620 [+], 1245integraseIntegrase 
6PIOMA14_I_15101673617..1674021 [+], 405conserved hypothetical protein
7PIOMA14_I_15111674086..1675393 [-], 1308conserved hypothetical protein
8PIOMA14_I_15121675395..1676174 [-], 780conserved hypothetical protein with DUF1329 domain
9PIOMA14_I_15131676204..1678582 [-], 2379conserved hypothetical protein with MMPL domain
10PIOMA14_I_15141678908..1680635 [-], 1728ABC transporter ATP-binding protein
11PIOMA14_I_15151680661..1682415 [-], 1755ABC transporter ATP-binding protein
12PIOMA14_I_15161682448..1683062 [-], 615putative TetR family transcriptional regulatory
13PIOMA14_I_15171683350..1683661 [-], 312hypothetical protein
14PIOMA14_I_15181684427..1684633 [+], 207hypothetical protein
15PIOMA14_I_15191684700..1684930 [-], 231hypothetical protein
16PIOMA14_I_15201684857..1685201 [-], 345hypothetical protein
17PIOMA14_I_15211685155..1685277 [+], 123partial ISPsy14 transposition helper protein
18PIOMA14_I_15221685255..1685401 [-], 147hypothetical protein
19PIOMA14_I_15231685651..1686619 [+], 969probable DNA primase
20PIOMA14_I_15241686624..1687085 [+], 462conserved hypothetical protein with DUF3408 domain
21PIOMA14_I_15251687448..1687879 [+], 432conserved hypothetical protein
22PIOMA14_I_15261687863..1688942 [+], 1080probable relaxase/mobilization nucleaseRelaxase 
23PIOMA14_I_15271689087..1689341 [+], 255hypothetical protein
24PIOMA14_I_15281689338..1689523 [-], 186hypothetical protein
25PIOMA14_I_15291689742..1690290 [-], 549partial transposase in ISPi1
26PIOMA14_I_15301690323..1690565 [+], 243hypothetical protein
27PIOMA14_I_15311690832..1692049 [-], 1218transposase in ISPi2
28PIOMA14_I_15321692176..1693108 [+], 933conserved hypothetical protein with rev domain
29PIOMA14_I_15331693369..1693680 [-], 312hypothetical protein

The graph information of MTnPi3 components from AP014597
Complete gene list of MTnPi3 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_15491707586..1709949 [-], 2364putative thiol protease/hemagglutinin PrtT
2PIOMA14_I_15501709954..1710148 [-], 195hypothetical protein
3PIOMA14_I_15511710195..1711133 [-], 939conserved hypothetical protein
4PIOMA14_I_15521711204..1711356 [+], 153hypothetical protein
5PIOMA14_I_15531711743..1711859 [+], 117conserved hypothetical protein
6PIOMA14_I_15541711944..1713023 [-], 1080probable relaxase/mobilization nucleaseRelaxase 
7PIOMA14_I_15551713007..1713438 [-], 432conserved hypothetical protein
8PIOMA14_I_15561713801..1714262 [-], 462conserved hypothetical protein with DUF3408 domain
9PIOMA14_I_15571714267..1715235 [-], 969probable DNA primase
10PIOMA14_I_15581715485..1715631 [+], 147hypothetical protein
11PIOMA14_I_15591715609..1715731 [-], 123partial ISPsy14 transposition helper protein
12PIOMA14_I_15601715685..1716029 [+], 345hypothetical protein
13PIOMA14_I_15611715956..1716186 [+], 231hypothetical protein
14PIOMA14_I_15621716253..1716459 [-], 207hypothetical protein
15PIOMA14_I_15631717004..1717063 [+], 60conserved hypothetical protein
16PIOMA14_I_15641717225..1717536 [+], 312hypothetical protein
17PIOMA14_I_15651717824..1718438 [+], 615probable TetR family transcriptional regulator
18PIOMA14_I_15661718471..1720225 [+], 1755ABC transporter ATP-binding protein
19PIOMA14_I_15671720251..1721978 [+], 1728ABC transporter ATP-binding protein
20PIOMA14_I_15681722304..1724682 [+], 2379conserved hypothetical protein with MMPL domain
21PIOMA14_I_15691724712..1725491 [+], 780conserved hypothetical protein with DUF1329 domain
22PIOMA14_I_15701725493..1726800 [+], 1308conserved hypothetical protein
23PIOMA14_I_15711726865..1727269 [-], 405conserved hypothetical protein
24PIOMA14_I_15721727266..1728510 [-], 1245integraseIntegrase 
25PIOMA14_I_15731728523..1729752 [-], 1230integrase
26PIOMA14_I_15741729795..1729965 [+], 171conserved hypothetical protein
27PIOMA14_I_15751730031..1730207 [+], 177hypothetical protein
28PIOMA14_I_15761730382..1731092 [-], 711hypothetical protein with OMP-b-brl domain
29PIOMA14_I_15771731177..1733915 [-], 2739calcium-transporting ATPase
30PIOMA14_I_15781734161..1734628 [+], 468conserved hypothetical protein with DUF150 domain
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences3Fasta
Proteins64Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU