 ICEberg ID | 185_IME |
Name  | MTnPi3  |
| Family | - |
| Organism | Prevotella intermedia s 17 |
| Size (bp) | 18468 bp |
| GC content [Genome] (%) | |
| Insertion site | TTAC NNNNN A/G A/G |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | AP014597 (complete IME sequence in this genome) |
| Replicon | - |
| Genome coordinates | 990637..1009104 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 990930..992009; PIOMA14_I_0897 Family: MOBP |
The graph information of MTnPi3 components from AP014597 | |||||
 | |||||
| Complete gene list of MTnPi3 from AP014597 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | PIOMA14_I_0894 | 987431..988432 [+], 1002 | conserved hypothetical protein with virulence-RhuM domain | ||
| 2 | PIOMA14_I_0895 | 988728..990479 [+], 1752 | conserved hypothetical protein with peptidase-M6 domain | ||
| 3 | PIOMA14_I_0896 | 990729..990845 [+], 117 | conserved hypothetical protein | ||
| 4 | PIOMA14_I_0897 | 990930..992009 [-], 1080 | probable relaxase/mobilization nuclease | Relaxase | |
| 5 | PIOMA14_I_0898 | 991993..992424 [-], 432 | conserved hypothetical protein | ||
| 6 | PIOMA14_I_0899 | 992787..993248 [-], 462 | conserved hypothetical protein with DUF3408 domain | ||
| 7 | PIOMA14_I_0900 | 993253..994221 [-], 969 | probable DNA primase | ||
| 8 | PIOMA14_I_0901 | 994471..994617 [+], 147 | hypothetical protein | ||
| 9 | PIOMA14_I_0902 | 994595..994717 [-], 123 | partial ISPsy14 transposition helper protein | ||
| 10 | PIOMA14_I_0903 | 994671..995015 [+], 345 | hypothetical protein | ||
| 11 | PIOMA14_I_0904 | 994942..995172 [+], 231 | hypothetical protein | ||
| 12 | PIOMA14_I_0905 | 995239..995445 [-], 207 | hypothetical protein | ||
| 13 | PIOMA14_I_0906 | 995990..996049 [+], 60 | conserved hypothetical protein | ||
| 14 | PIOMA14_I_0907 | 996211..996522 [+], 312 | hypothetical protein | ||
| 15 | PIOMA14_I_0908 | 996810..997424 [+], 615 | probable TetR family transcriptional regulator | ||
| 16 | PIOMA14_I_0909 | 997457..999211 [+], 1755 | ABC transporter ATP-binding protein | ||
| 17 | PIOMA14_I_0910 | 999237..1000964 [+], 1728 | ABC transporter ATP-binding protein | ||
| 18 | PIOMA14_I_0911 | 1001290..1003668 [+], 2379 | conserved hypothetical protein with MMPL domain | ||
| 19 | PIOMA14_I_0912 | 1003698..1004477 [+], 780 | conserved hypothetical protein with DUF1329 | ||
| 20 | PIOMA14_I_0913 | 1004479..1005786 [+], 1308 | conserved hypothetical protein | ||
| 21 | PIOMA14_I_0914 | 1005851..1006255 [-], 405 | conserved hypothetical protein | ||
| 22 | PIOMA14_I_0915 | 1006252..1007496 [-], 1245 | integrase | Integrase | |
| 23 | PIOMA14_I_0916 | 1007509..1008738 [-], 1230 | integrase | ||
| 24 | PIOMA14_I_0917 | 1008781..1008951 [+], 171 | conserved hypothetical protein | ||
| 25 | PIOMA14_I_0918 | 1009017..1009151 [+], 135 | hypothetical protein | ||
| 26 | PIOMA14_I_0919 | 1009417..1010598 [+], 1182 | bifunctional purine biosynthesis protein | ||
| 27 | PIOMA14_I_0920 | 1010636..1010821 [+], 186 | hypothetical protein | ||
| 28 | PIOMA14_I_0921 | 1010978..1011433 [+], 456 | conserved hypothetical protein | ||
| 29 | PIOMA14_I_0922 | 1011597..1012643 [+], 1047 | 3-dehydroquinate synthase | ||
| 30 | PIOMA14_I_0923 | 1012701..1013717 [-], 1017 | O-succinylbenzoic acid-CoA ligase | ||
The graph information of MTnPi3 components from AP014597 | |||||
 | |||||
| Complete gene list of MTnPi3 from AP014597 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | PIOMA14_I_1505 | 1668422..1669990 [-], 1569 | conserved hypothetical protein | ||
| 2 | PIOMA14_I_1506 | 1670687..1670782 [+], 96 | conserved hypothetical protein | ||
| 3 | PIOMA14_I_1507 | 1670946..1671053 [+], 108 | conserved hypothetical protein | ||
| 4 | PIOMA14_I_1508 | 1671134..1672363 [+], 1230 | integrase | ||
| 5 | PIOMA14_I_1509 | 1672376..1673620 [+], 1245 | integrase | Integrase | |
| 6 | PIOMA14_I_1510 | 1673617..1674021 [+], 405 | conserved hypothetical protein | ||
| 7 | PIOMA14_I_1511 | 1674086..1675393 [-], 1308 | conserved hypothetical protein | ||
| 8 | PIOMA14_I_1512 | 1675395..1676174 [-], 780 | conserved hypothetical protein with DUF1329 domain | ||
| 9 | PIOMA14_I_1513 | 1676204..1678582 [-], 2379 | conserved hypothetical protein with MMPL domain | ||
| 10 | PIOMA14_I_1514 | 1678908..1680635 [-], 1728 | ABC transporter ATP-binding protein | ||
| 11 | PIOMA14_I_1515 | 1680661..1682415 [-], 1755 | ABC transporter ATP-binding protein | ||
| 12 | PIOMA14_I_1516 | 1682448..1683062 [-], 615 | putative TetR family transcriptional regulatory | ||
| 13 | PIOMA14_I_1517 | 1683350..1683661 [-], 312 | hypothetical protein | ||
| 14 | PIOMA14_I_1518 | 1684427..1684633 [+], 207 | hypothetical protein | ||
| 15 | PIOMA14_I_1519 | 1684700..1684930 [-], 231 | hypothetical protein | ||
| 16 | PIOMA14_I_1520 | 1684857..1685201 [-], 345 | hypothetical protein | ||
| 17 | PIOMA14_I_1521 | 1685155..1685277 [+], 123 | partial ISPsy14 transposition helper protein | ||
| 18 | PIOMA14_I_1522 | 1685255..1685401 [-], 147 | hypothetical protein | ||
| 19 | PIOMA14_I_1523 | 1685651..1686619 [+], 969 | probable DNA primase | ||
| 20 | PIOMA14_I_1524 | 1686624..1687085 [+], 462 | conserved hypothetical protein with DUF3408 domain | ||
| 21 | PIOMA14_I_1525 | 1687448..1687879 [+], 432 | conserved hypothetical protein | ||
| 22 | PIOMA14_I_1526 | 1687863..1688942 [+], 1080 | probable relaxase/mobilization nuclease | Relaxase | |
| 23 | PIOMA14_I_1527 | 1689087..1689341 [+], 255 | hypothetical protein | ||
| 24 | PIOMA14_I_1528 | 1689338..1689523 [-], 186 | hypothetical protein | ||
| 25 | PIOMA14_I_1529 | 1689742..1690290 [-], 549 | partial transposase in ISPi1 | ||
| 26 | PIOMA14_I_1530 | 1690323..1690565 [+], 243 | hypothetical protein | ||
| 27 | PIOMA14_I_1531 | 1690832..1692049 [-], 1218 | transposase in ISPi2 | ||
| 28 | PIOMA14_I_1532 | 1692176..1693108 [+], 933 | conserved hypothetical protein with rev domain | ||
| 29 | PIOMA14_I_1533 | 1693369..1693680 [-], 312 | hypothetical protein | ||
The graph information of MTnPi3 components from AP014597 | |||||
 | |||||
| Complete gene list of MTnPi3 from AP014597 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | PIOMA14_I_1549 | 1707586..1709949 [-], 2364 | putative thiol protease/hemagglutinin PrtT | ||
| 2 | PIOMA14_I_1550 | 1709954..1710148 [-], 195 | hypothetical protein | ||
| 3 | PIOMA14_I_1551 | 1710195..1711133 [-], 939 | conserved hypothetical protein | ||
| 4 | PIOMA14_I_1552 | 1711204..1711356 [+], 153 | hypothetical protein | ||
| 5 | PIOMA14_I_1553 | 1711743..1711859 [+], 117 | conserved hypothetical protein | ||
| 6 | PIOMA14_I_1554 | 1711944..1713023 [-], 1080 | probable relaxase/mobilization nuclease | Relaxase | |
| 7 | PIOMA14_I_1555 | 1713007..1713438 [-], 432 | conserved hypothetical protein | ||
| 8 | PIOMA14_I_1556 | 1713801..1714262 [-], 462 | conserved hypothetical protein with DUF3408 domain | ||
| 9 | PIOMA14_I_1557 | 1714267..1715235 [-], 969 | probable DNA primase | ||
| 10 | PIOMA14_I_1558 | 1715485..1715631 [+], 147 | hypothetical protein | ||
| 11 | PIOMA14_I_1559 | 1715609..1715731 [-], 123 | partial ISPsy14 transposition helper protein | ||
| 12 | PIOMA14_I_1560 | 1715685..1716029 [+], 345 | hypothetical protein | ||
| 13 | PIOMA14_I_1561 | 1715956..1716186 [+], 231 | hypothetical protein | ||
| 14 | PIOMA14_I_1562 | 1716253..1716459 [-], 207 | hypothetical protein | ||
| 15 | PIOMA14_I_1563 | 1717004..1717063 [+], 60 | conserved hypothetical protein | ||
| 16 | PIOMA14_I_1564 | 1717225..1717536 [+], 312 | hypothetical protein | ||
| 17 | PIOMA14_I_1565 | 1717824..1718438 [+], 615 | probable TetR family transcriptional regulator | ||
| 18 | PIOMA14_I_1566 | 1718471..1720225 [+], 1755 | ABC transporter ATP-binding protein | ||
| 19 | PIOMA14_I_1567 | 1720251..1721978 [+], 1728 | ABC transporter ATP-binding protein | ||
| 20 | PIOMA14_I_1568 | 1722304..1724682 [+], 2379 | conserved hypothetical protein with MMPL domain | ||
| 21 | PIOMA14_I_1569 | 1724712..1725491 [+], 780 | conserved hypothetical protein with DUF1329 domain | ||
| 22 | PIOMA14_I_1570 | 1725493..1726800 [+], 1308 | conserved hypothetical protein | ||
| 23 | PIOMA14_I_1571 | 1726865..1727269 [-], 405 | conserved hypothetical protein | ||
| 24 | PIOMA14_I_1572 | 1727266..1728510 [-], 1245 | integrase | Integrase | |
| 25 | PIOMA14_I_1573 | 1728523..1729752 [-], 1230 | integrase | ||
| 26 | PIOMA14_I_1574 | 1729795..1729965 [+], 171 | conserved hypothetical protein | ||
| 27 | PIOMA14_I_1575 | 1730031..1730207 [+], 177 | hypothetical protein | ||
| 28 | PIOMA14_I_1576 | 1730382..1731092 [-], 711 | hypothetical protein with OMP-b-brl domain | ||
| 29 | PIOMA14_I_1577 | 1731177..1733915 [-], 2739 | calcium-transporting ATPase | ||
| 30 | PIOMA14_I_1578 | 1734161..1734628 [+], 468 | conserved hypothetical protein with DUF150 domain | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
 Gene may play role in conjugative transfer |
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
(2) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] 
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| experimental literature |
| in silico analysis literature |