ICEberg
I. Information of IME
ICEberg ID184_IME
Name MTnPi2 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s OMA14
Size (bp)16557 bp
GC content [Genome] (%)
Insertion siteTTGC NNNNN AA
Function-
Species that IME can be transferred to-
Nucleotide SequenceAP014597; AP014598 (complete IME sequence in this genome)
Replicon-
Genome coordinates767242..783798
Putative oriT region -
Putative relaxase coordinates: 767485..768546; PIOMA14_I_0701  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi2 is not available.


The graph information of MTnPi2 components from AP014597
Complete gene list of MTnPi2 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_0698762705..765929 [+], 3225carbamoyl-phosphate synthase large subunit
2PIOMA14_I_0699766171..766929 [+], 759conserved hypothetical protein
3PIOMA14_I_0700767118..767264 [+], 147hypothetical protein
4PIOMA14_I_0701767485..768546 [-], 1062relaxase/mobilization nucleaseRelaxase 
5PIOMA14_I_0702768530..768961 [-], 432conserved hypothetical protein
6PIOMA14_I_0703769116..769229 [+], 114hypothetical protein
7PIOMA14_I_0704769323..769784 [-], 462conserved hypothetical protein with DUF3408 domain
8PIOMA14_I_0705769789..770739 [-], 951probable DNA primase
9PIOMA14_I_0706770922..771401 [-], 480partial virulence-associated E family protein
10PIOMA14_I_0707771388..772374 [-], 987partial virulence-associated E family protein
11PIOMA14_I_0708772575..772655 [+], 81hypothetical protein
12PIOMA14_I_0709772670..773032 [+], 363hypothetical protein with HTH17 domain
13PIOMA14_I_0710773063..773353 [+], 291hypothetical protein
14PIOMA14_I_0711773481..774230 [+], 750conserved hypothetical protein with ThiF domain
15PIOMA14_I_0712774245..775051 [-], 807putative LuxR family transcriptional regulator
16PIOMA14_I_0713775143..777494 [+], 2352conserved hypothetical protein with Can B domain
17PIOMA14_I_0714777495..777680 [+], 186hypothetical protein
18PIOMA14_I_0715777698..779992 [+], 2295conserved hypothetical protein with Can B domain
19PIOMA14_I_0716780066..780374 [+], 309hypothetical protein
20PIOMA14_I_0717780548..780964 [-], 417conserved hypothetical protein
21PIOMA14_I_0718780961..782256 [-], 1296integraseIntegrase 
22PIOMA14_I_0719782269..783498 [-], 1230integrase
23PIOMA14_I_0720783550..783645 [+], 96conserved hypothetical protein
24PIOMA14_I_0721783711..783806 [+], 96hypothetical protein
25PIOMA14_I_0722784132..784323 [-], 192hypothetical protein
26PIOMA14_I_0723784714..786054 [+], 1341conserved hypothetical protein with UPF004 and RadicalSAM domain
27PIOMA14_I_0724786051..787052 [+], 1002glycosyltransferase family 2
28PIOMA14_I_0725787209..788015 [+], 807conserved hypothetical protein

The graph information of MTnPi2 components from AP014597
Complete gene list of MTnPi2 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_12541384954..1386813 [+], 1860ABC transporter ATP-binding protein
2PIOMA14_I_12551386818..1388791 [+], 1974sulfatase
3PIOMA14_I_12561389332..1390561 [+], 1230integrase
4PIOMA14_I_12571390574..1391869 [+], 1296integraseIntegrase 
5PIOMA14_I_12581391866..1392282 [+], 417conserved hypothetical protein
6PIOMA14_I_12591392456..1392764 [-], 309hypothetical protein
7PIOMA14_I_12601392838..1395132 [-], 2295conserved hypothetical protein with Can-B2 domain
8PIOMA14_I_12611395150..1395335 [-], 186hypothetical protein
9PIOMA14_I_12621395336..1397687 [-], 2352conserved hypothetical protein with Can-B2 domain
10PIOMA14_I_12631397779..1398585 [+], 807putative LuxR family transcriptional regulator
11PIOMA14_I_12641398600..1399349 [-], 750conserved hypothetical protein with ThiF domain
12PIOMA14_I_12651399477..1399767 [-], 291hypothetical protein
13PIOMA14_I_12661399798..1400160 [-], 363hypothetical protein with HTH17 domain
14PIOMA14_I_12671400498..1400638 [-], 141hypothetical protein
15PIOMA14_I_12681400642..1401442 [+], 801partial virulence-associated E family protein
16PIOMA14_I_12691401429..1401908 [+], 480partial virulence-associated E family protein
17PIOMA14_I_12701402091..1403041 [+], 951probable DNA primase
18PIOMA14_I_12711403046..1403507 [+], 462conserved hypothetical protein with DUF3408 domain
19PIOMA14_I_12721403647..1403787 [+], 141hypothetical protein
20PIOMA14_I_12731403869..1404300 [+], 432conserved hypothetical protein
21PIOMA14_I_12741404284..1405345 [+], 1062relaxase/mobilisation nucleaseRelaxase 
22PIOMA14_I_12751405714..1406601 [-], 888conserved hypothetical protein with EamA domain
23PIOMA14_I_12761406776..1406895 [+], 120hypothetical protein
24PIOMA14_I_12771407065..1408012 [+], 948putative lipid A biosynthesis acyltransferase
25PIOMA14_I_12781408035..1408898 [+], 864conserved hypothetical protein with LicD domain
26PIOMA14_I_12791409283..1410332 [-], 1050conserved hypothetical protein with Glyphos-transf domain

The graph information of MTnPi2 components from AP014598
Complete gene list of MTnPi2 from AP014598
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_II_0320382269..382475 [+], 207hypothetical protein
2PIOMA14_II_0321382675..384318 [+], 1644peptidase M23 family
3PIOMA14_II_0322384353..385990 [+], 1638peptidase C69 family/dipeptidase
4PIOMA14_II_0323386574..387635 [-], 1062relaxase/mobilization nucleaseRelaxase 
5PIOMA14_II_0324387619..388050 [-], 432conserved hypothetical protein
6PIOMA14_II_0325388132..388272 [-], 141hypothetical protein
7PIOMA14_II_0326388412..388873 [-], 462conserved hypothetical protein with DUF3408 domain
8PIOMA14_II_0327388878..389828 [-], 951probable DNA primase
9PIOMA14_II_0328390011..390490 [-], 480partial virulence-associated E family protein
10PIOMA14_II_0329390477..391463 [-], 987partial virulence-associated E family protein
11PIOMA14_II_0330391664..391744 [+], 81hypothetical protein
12PIOMA14_II_0331391759..392121 [+], 363hypothetical protein with HTH17 domain
13PIOMA14_II_0332392152..392442 [+], 291hypothetical protein
14PIOMA14_II_0333392570..393319 [+], 750conserved hypothetical protein with ThiF domain
15PIOMA14_II_0334393334..394140 [-], 807putative transcriptional regulator LuxR family
16PIOMA14_II_0335394232..396583 [+], 2352conserved hypothetical protein with CnaB2 domain
17PIOMA14_II_0336396584..396769 [+], 186hypothetical protein
18PIOMA14_II_0337396787..399081 [+], 2295conserved hypothetical protein with CnaB2 domain
19PIOMA14_II_0338399155..399463 [+], 309hypothetical protein
20PIOMA14_II_0339399637..400053 [-], 417conserved hypothetical protein
21PIOMA14_II_0340400050..401345 [-], 1296integraseIntegrase 
22PIOMA14_II_0341401358..402587 [-], 1230integrase
23PIOMA14_II_0342402639..402734 [+], 96conserved hypothetical protein
24PIOMA14_II_0343402800..402970 [+], 171hypothetical protein
25PIOMA14_II_0344403309..403707 [+], 399hypothetical protein
26PIOMA14_II_0345403740..403835 [+], 96conserved hypothetical protein
27PIOMA14_II_0346403926..405776 [+], 1851Rhs element Vgr protein
28PIOMA14_II_0347405780..406571 [+], 792hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences2Fasta
Proteins59Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU