ICEberg
I. Information of IME
ICEberg ID183_IME
Name MTnPi10 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s 17
Size (bp)7591 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceNC_017860 (complete IME sequence in this genome)
Replicon-
Genome coordinates436516..444106
Putative oriT region -
Putative relaxase coordinates: 441844..442767; PIN17_RS01830  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi10 is not available.


The graph information of MTnPi10 components from NC_017860
Complete gene list of MTnPi10 from NC_017860
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIN17_RS01785431819..432553 [+], 735hypothetical protein
2PIN17_RS01790432740..433168 [-], 429hypothetical protein
3PIN17_RS11655433189..433446 [-], 258hypothetical protein
4PIN17_RS11660433560..433748 [+], 189hypothetical protein
5PIN17_RS01795433799..434146 [-], 348hypothetical protein
6PIN17_RS01805434802..436034 [-], 1233site-specific integrase
7PIN17_RS01810436516..437808 [+], 1293site-specific integraseIntegrase 
8PIN17_RS01815437816..439369 [+], 1554DUF2813 domain-containing protein
9PIN17_RS01820439722..441044 [-], 1323ATP-binding protein
10PIN17_RS01825441163..441822 [-], 660hypothetical protein
11PIN17_RS01830441844..442767 [-], 924mobilization proteinRelaxase 
12PIN17_RS01835442764..443111 [-], 348plasmid mobilization relaxosome protein MobC
13PIN17_RS01840443216..444106 [-], 891mobilization protein
14PIN17_RS01845444302..445339 [-], 1038mobilization protein
15PIN17_RS01850445336..445644 [-], 309DUF3853 family protein
16PIN17_RS01855446002..446205 [+], 204XRE family transcriptional regulator
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins7Fasta
(1) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU