ICEberg
I. Information of IME
ICEberg ID182_IME
Name MTnPi1 This is a predicted IME derived from literature
Family-
OrganismPrevotella intermedia s 17
Size (bp)18326 bp
GC content [Genome] (%)
Insertion siteTTAC NNNNN AA
Function-
Species that IME can be transferred to-
Nucleotide SequenceAP014597 (complete IME sequence in this genome)
Replicon-
Genome coordinates241445..259770
Putative oriT region -
Putative relaxase coordinates: 241690..242751; PIOMA14_I_0217  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MTnPi1 is not available.


The graph information of MTnPi1 components from AP014597
Complete gene list of MTnPi1 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_0215237479..239203 [+], 1725single-stranded-DNA-specific exonuclease RecJ
2PIOMA14_I_0216239236..241152 [+], 1917ATP-dependent helicase RecQ
3PIOMA14_I_0217241690..242751 [-], 1062relaxase/mobilization nucleaseRelaxase 
4PIOMA14_I_0218242735..243166 [-], 432conserved hypothetical protein
5PIOMA14_I_0219243321..243425 [+], 105hypothetical protein
6PIOMA14_I_0220243549..244019 [-], 471conserved hypothetical protein with DUF3408 domain
7PIOMA14_I_0221244022..245026 [-], 1005probable DNA primase
8PIOMA14_I_0222245263..246693 [-], 1431virulence-associated protein E
9PIOMA14_I_0223246985..247269 [+], 285hypothetical protein with helix-turn-helix domain
10PIOMA14_I_0224247300..247590 [+], 291hypothetical protein with helix-turn-helix domain
11PIOMA14_I_0225247718..248467 [+], 750conserved hypothetical protein with ThiF family domain
12PIOMA14_I_0226248482..249288 [-], 807LuxR family transcriptional regulator
13PIOMA14_I_0227249428..250075 [+], 648conserved hypothetical protein
14PIOMA14_I_0228250056..250187 [+], 132hypothetical protein
15PIOMA14_I_0229250220..250372 [+], 153hypothetical protein
16PIOMA14_I_0230250543..251643 [+], 1101conserved hypothetical protein
17PIOMA14_I_0231251621..252685 [+], 1065conserved hypothetical protein
18PIOMA14_I_0232252682..253875 [+], 1194probable arginase/agmatinase
19PIOMA14_I_0233253872..255995 [+], 2124conserved hypothetical protein
20PIOMA14_I_0234256469..256885 [-], 417hypothetical protein
21PIOMA14_I_0235256925..258175 [-], 1251integraseIntegrase 
22PIOMA14_I_0236258241..259470 [-], 1230integrase
23PIOMA14_I_0237259522..259617 [+], 96conserved hypothetical protein
24PIOMA14_I_0238259683..259886 [+], 204hypothetical protein
25groES259953..260222 [+], 270chaperonin GroES
26groEL260345..261970 [+], 1626chaperonin GroEL

The graph information of MTnPi1 components from AP014597
Complete gene list of MTnPi1 from AP014597
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1PIOMA14_I_18392076695..2078299 [-], 1605conserved hypothetical protein with BACON domain
2PIOMA14_I_18402078335..2079954 [-], 1620conserved hypothetical protein with BACON domain
3PIOMA14_I_18412081053..2082282 [+], 1230integrase
4PIOMA14_I_18422082348..2083598 [+], 1251integraseIntegrase 
5PIOMA14_I_18432083638..2084054 [+], 417hypothetical protein
6PIOMA14_I_18442084528..2086651 [-], 2124conserved hypothetical protein
7PIOMA14_I_18452086648..2087841 [-], 1194probable arginase/agmatinase
8PIOMA14_I_18462087838..2088902 [-], 1065conserved hypothetical protein
9PIOMA14_I_18472088880..2089980 [-], 1101conserved hypothetical protein
10PIOMA14_I_18482090151..2090303 [-], 153hypothetical protein
11PIOMA14_I_18492090448..2091095 [-], 648conserved hypothetical protein
12PIOMA14_I_18502091235..2092041 [+], 807LuxR family transcriptional regulator
13PIOMA14_I_18512092056..2092805 [-], 750conserved hypothetical protein with ThiF domain
14PIOMA14_I_18522092933..2093223 [-], 291hypothetical protein with helix-turn-helix domain
15PIOMA14_I_18532093254..2093538 [-], 285hypothetical protein with helix-turn-helix domain
16PIOMA14_I_18542093830..2095260 [+], 1431virulence-associated E family protein
17PIOMA14_I_18552095357..2095485 [+], 129hypothetical protein
18PIOMA14_I_18562095497..2096501 [+], 1005probable DNA primase
19PIOMA14_I_18572096504..2096974 [+], 471conserved hypothetical protein with DF3408 domain
20PIOMA14_I_18582097357..2097788 [+], 432conserved hypothetical protein
21PIOMA14_I_18592097772..2098833 [+], 1062relaxase/mobilization nucleaseRelaxase 
22PIOMA14_I_18602098867..2099226 [+], 360hypothetical protein
23PIOMA14_I_18612099341..2100639 [-], 1299putative DNA recombination protein RmuC
24PIOMA14_I_18622100651..2103131 [-], 2481alanine racemase/Mur ligase domain protein
25PIOMA14_I_18632103272..2103700 [-], 429conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences2Fasta
Proteins40Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Naito M; Ogura Y; Itoh T; Shoji M; Okamoto M; Hayashi T; Nakayama K (2016). The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. DNA Res. 23(1):11-9. [PudMed:26645327] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU