 ICEberg ID | 179_IME |
Name  | MGIVmi1  |
| Family | - |
| Organism | Vibrio mimicus VM573 |
| Size (bp) | 16511 bp |
| GC content [Genome] (%) | |
| Insertion site | yicC |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | NZ_ACYV01000005 (complete IME sequence in this contig) |
| Replicon | - |
| Coordinates | 33427..50645 |
| Putative oriT region | - |
| Putative relaxase | - |
The Interaction Network among ICE/IME/CIME/plasmid | ||||||
 | ||||||
| Detailed Informatioin of the Interaction Network | ||||||
| # | IME | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
| 1 | MGIVmi1 | pVCR94 [IncA/C plasmid] | in trans | E. coli MG1655 Rf | E. coli MG1655 Nx | 25340549 |
| This is an interactioin derived from experimental literature |
The graph information of MGIVmi1 components from NZ_ACYV01000005 | |||||
 | |||||
| Complete gene list of MGIVmi1 from NZ_ACYV01000005 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | VMD_RS14830 | 29140..29988 [-], 849 | MurR/RpiR family transcriptional regulator | ||
| 2 | murQ | 30219..31121 [+], 903 | N-acetylmuramic acid 6-phosphate etherase | ||
| 3 | VMD_RS14820 | 31152..32597 [+], 1446 | PTS N-acetylmuramic acid transporter subunits IIBC | ||
| 4 | VMD_RS14815 | 32739..33227 [-], 489 | TIGR00645 family protein | ||
| 5 | VMD_RS14810 | 33427..33651 [-], 225 | hypothetical protein | ||
| 6 | VMD_RS14805 | 33652..33936 [-], 285 | DNA-binding protein | ||
| 7 | VMD_RS14800 | 33933..35627 [-], 1695 | DUF927 domain-containing protein | ||
| 8 | VMD_RS14795 | 35896..36687 [+], 792 | hypothetical protein | ||
| 9 | VMD_RS14790 | 36680..37618 [+], 939 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | ||
| 10 | VMD_RS14785 | 37657..39798 [+], 2142 | DNA methyltransferase | ||
| 11 | VMD_RS14780 | 39801..42401 [+], 2601 | hypothetical protein | ||
| 12 | VMD_RS14775 | 42475..43563 [-], 1089 | ImmA/IrrE family metallo-endopeptidase | ||
| 13 | VMD_RS14770 | 43569..44165 [-], 597 | hypothetical protein | ||
| 14 | VMD_RS14765 | 44765..45352 [+], 588 | hypothetical protein | ||
| 15 | VMD_RS0118280 | 45349..45879 [+], 531 | hypothetical protein | ||
| 16 | VMD_RS14760 | 46008..46721 [+], 714 | hypothetical protein | ||
| 17 | VMD_RS0118285 | 47018..47302 [+], 285 | hypothetical protein | ||
| 18 | VMD_RS0118290 | 47468..47797 [-], 330 | XRE family transcriptional regulator | ||
| 19 | VMD_RS0118295 | 47909..48397 [+], 489 | hypothetical protein | ||
| 20 | VMD_RS14755 | 48389..49594 [-], 1206 | site-specific integrase | Integrase | |
| 21 | VMD_RS14750 | 49779..50645 [-], 867 | YicC family protein | ||
| 22 | VMD_RS14745 | 50809..51525 [+], 717 | ribonuclease PH | ||
| 23 | VMD_RS14740 | 51724..52365 [+], 642 | orotate phosphoribosyltransferase | ||
| 24 | msbB | 52451..53428 [-], 978 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | ||
| 25 | VMD_RS14730 | 53447..54403 [-], 957 | lipid A biosynthesis lauroyl acyltransferase | ||
| 26 | VMD_RS14725 | 54400..54990 [-], 591 | nucleoid occlusion factor SlmA | ||
| 27 | VMD_RS20835 | 54946..55086 [+], 141 | lipid A biosynthesis lauroyl acyltransferase | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
| (2) Carraro N; Rivard N; Burrus V; Ceccarelli D (2017). Mobilizable genomic islands, different strategies for the dissemination of multidrug resistance and other adaptive traits. Mob Genet Elements. 7(2):1-6. [PudMed:28439449] |
| (3) Carraro N; Rivard N; Ceccarelli D; Colwell RR; Burrus V (2016). IncA/C Conjugative Plasmids Mobilize a New Family of Multidrug Resistance Islands in Clinical Vibrio cholerae Non-O1/Non-O139 Isolates from Haiti. MBio. 7(4). [PudMed:27435459] |
| (4) Marcoleta AE; Berrios-Pasten C; Nunez G; Monasterio O; Lagos R (2016). Klebsiella pneumoniae Asparagine tDNAs Are Integration Hotspots for Different Genomic Islands Encoding Microcin E492 Production Determinants and Other Putative Virulence Factors Present in Hypervirulent Strains. Front Microbiol. 0.88125. [PudMed:27375573] |
| (5) Carraro N; Matteau D; Burrus V; Rodrigue S (2015). Unraveling the regulatory network of IncA/C plasmid mobilization: When genomic islands hijack conjugative elements. Mob Genet Elements. 5(3):1-5. [PudMed:26442183] |
| (6) Carraro N; Matteau D; Luo P; Rodrigue S; Burrus V (2014). The master activator of IncA/C conjugative plasmids stimulates genomic islands and multidrug resistance dissemination. PLoS Genet. 10(10):e1004714. [PudMed:25340549] |