ICEberg
I. Information of IME
ICEberg ID179_IME
Name MGIVmi1 This IME is derived from experimental literature
Family-
OrganismVibrio mimicus VM573
Size (bp)16511 bp
GC content [Genome] (%)
Insertion siteyicC
Function-
Species that IME can be transferred to-
Nucleotide SequenceNZ_ACYV01000005 (complete IME sequence in this contig)
Replicon-
Coordinates33427..50645
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid


Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1MGIVmi1 pVCR94 [IncA/C plasmid] experimentalin trans E. coli MG1655 Rf E. coli MG1655 Nx 25340549

experimental This is an interactioin derived from experimental literature


The graph information of MGIVmi1 components from NZ_ACYV01000005
Complete gene list of MGIVmi1 from NZ_ACYV01000005
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1VMD_RS1483029140..29988 [-], 849MurR/RpiR family transcriptional regulator
2murQ30219..31121 [+], 903N-acetylmuramic acid 6-phosphate etherase
3VMD_RS1482031152..32597 [+], 1446PTS N-acetylmuramic acid transporter subunits IIBC
4VMD_RS1481532739..33227 [-], 489TIGR00645 family protein
5VMD_RS1481033427..33651 [-], 225hypothetical protein
6VMD_RS1480533652..33936 [-], 285DNA-binding protein
7VMD_RS1480033933..35627 [-], 1695DUF927 domain-containing protein
8VMD_RS1479535896..36687 [+], 792hypothetical protein
9VMD_RS1479036680..37618 [+], 939nucleotidyl transferase AbiEii/AbiGii toxin family protein
10VMD_RS1478537657..39798 [+], 2142DNA methyltransferase
11VMD_RS1478039801..42401 [+], 2601hypothetical protein
12VMD_RS1477542475..43563 [-], 1089ImmA/IrrE family metallo-endopeptidase
13VMD_RS1477043569..44165 [-], 597hypothetical protein
14VMD_RS1476544765..45352 [+], 588hypothetical protein
15VMD_RS011828045349..45879 [+], 531hypothetical protein
16VMD_RS1476046008..46721 [+], 714hypothetical protein
17VMD_RS011828547018..47302 [+], 285hypothetical protein
18VMD_RS011829047468..47797 [-], 330XRE family transcriptional regulator
19VMD_RS011829547909..48397 [+], 489hypothetical protein
20VMD_RS1475548389..49594 [-], 1206site-specific integraseIntegrase 
21VMD_RS1475049779..50645 [-], 867YicC family protein
22VMD_RS1474550809..51525 [+], 717ribonuclease PH
23VMD_RS1474051724..52365 [+], 642orotate phosphoribosyltransferase
24msbB52451..53428 [-], 978lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase
25VMD_RS1473053447..54403 [-], 957lipid A biosynthesis lauroyl acyltransferase
26VMD_RS1472554400..54990 [-], 591nucleoid occlusion factor SlmA
27VMD_RS2083554946..55086 [+], 141lipid A biosynthesis lauroyl acyltransferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Carraro N; Rivard N; Burrus V; Ceccarelli D (2017). Mobilizable genomic islands, different strategies for the dissemination of multidrug resistance and other adaptive traits. Mob Genet Elements. 7(2):1-6. [PudMed:28439449]
(3) Carraro N; Rivard N; Ceccarelli D; Colwell RR; Burrus V (2016). IncA/C Conjugative Plasmids Mobilize a New Family of Multidrug Resistance Islands in Clinical Vibrio cholerae Non-O1/Non-O139 Isolates from Haiti. MBio. 7(4). [PudMed:27435459]
(4) Marcoleta AE; Berrios-Pasten C; Nunez G; Monasterio O; Lagos R (2016). Klebsiella pneumoniae Asparagine tDNAs Are Integration Hotspots for Different Genomic Islands Encoding Microcin E492 Production Determinants and Other Putative Virulence Factors Present in Hypervirulent Strains. Front Microbiol. 0.88125. [PudMed:27375573]
(5) Carraro N; Matteau D; Burrus V; Rodrigue S (2015). Unraveling the regulatory network of IncA/C plasmid mobilization: When genomic islands hijack conjugative elements. Mob Genet Elements. 5(3):1-5. [PudMed:26442183]
(6) Carraro N; Matteau D; Luo P; Rodrigue S; Burrus V (2014). The master activator of IncA/C conjugative plasmids stimulates genomic islands and multidrug resistance dissemination. PLoS Genet. 10(10):e1004714. [PudMed:25340549]
 

Genomics & Bioinformatics Group in MML, SJTU