I. Information of IME
ICEberg ID170_IME
Name MGIVchHai4 This is a predicted IME derived from literature
OrganismVibrio cholerae HE45
Size (bp)-
GC content [Genome] (%)
Insertion site-
Species that IME can be transferred to-
Nucleotide SequenceALED01000020 (partical IME sequence)
Putative oriT region -
Putative relaxase -

II. IME interaction with ICE/CIME/Plasmids

The interaction information of MGIVchHai4 is not available.

The graph information of MGIVchHai4 components from ALED01000020
Incomplete gene list of MGIVchHai4 from ALED01000020
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1VCHE45_032867294..67980 [-], 687hypothetical protein
2VCHE45_032968305..68421 [-], 117hypothetical protein
3VCHE45_033068450..70858 [-], 2409eukaryotic and archaeal DNA primase small subunit
4cro70884..71255 [-], 372transcriptional regulator, XRE family
5VCHE45_033271287..71589 [-], 303hypothetical protein
6VCHE45_033371785..72123 [-], 339hypothetical protein
7VCHE45_033472125..73375 [-], 1251phage integraseIntegrase 
8VCHE45_033573691..74557 [-], 867hypothetical protein
9rph74721..75437 [+], 717ribonuclease PH
10pyrE75805..76446 [+], 642orotate phosphoribosyltransferase
11msbB76533..77510 [-], 978lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] experimental in_silico
(2) Hasan NA; Choi SY; Eppinger M; Clark PW; Chen A; Alam M; Haley BJ; Taviani E; Hine E; Su Q; Tallon LJ; Prosper JB; Furth K; Hoq MM; Li H; Fraser-Liggett CM; Cravioto A; Huq A; Ravel J; Cebula TA; Colwell RR (2012). Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci U S A. 109(29):E2010-7. [PudMed:22711841]
experimental experimental literature
in_silico in silico analysis literature