ICEberg
I. Information of IME
ICEberg ID169_IME
Name MGIVchHai2 This is a predicted IME derived from literature
Family-
OrganismVibrio cholerae HE48
Size (bp)19406 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceAFOR01000003.1 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MGIVchHai2 is not available.


The graph information of MGIVchHai2 components from AFOR01000003
Incomplete gene list of MGIVchHai2 from AFOR01000003
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1VCHE48_025362511..63158 [-], 648hypothetical protein
2VCHE48_025463337..63465 [+], 129hypothetical protein
3VCHE48_025563483..63599 [-], 117hypothetical protein
4VCHE48_025663628..65628 [-], 2001eukaryotic and archaeal DNA primase small subunit
5cro66062..66433 [-], 372transcriptional regulator, XRE family
6VCHE48_025866465..66638 [-], 174hypothetical protein
7VCHE48_025966962..67300 [-], 339hypothetical protein
8VCHE48_026067302..68378 [-], 1077phage integraseIntegrase 
9VCHE48_026168439..68558 [-], 120hypothetical protein
10VCHE48_026268589..68726 [-], 138putative lipoprotein
11VCHE48_026368910..69776 [-], 867hypothetical protein
12rph69940..70656 [+], 717ribonuclease PH
13pyrE70856..71497 [+], 642orotate phosphoribosyltransferase
14msbB71584..72561 [-], 978lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] experimental in_silico
(2) Hasan NA; Choi SY; Eppinger M; Clark PW; Chen A; Alam M; Haley BJ; Taviani E; Hine E; Su Q; Tallon LJ; Prosper JB; Furth K; Hoq MM; Li H; Fraser-Liggett CM; Cravioto A; Huq A; Ravel J; Cebula TA; Colwell RR (2012). Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci U S A. 109(29):E2010-7. [PudMed:22711841]
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU