ICEberg
I. Information of IME
ICEberg ID168_IME
Name MGIVchHai1 This is a predicted IME derived from literature
Family-
OrganismVibrio cholerae HE39
Size (bp)-
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceAFOQ01000004 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MGIVchHai1 is not available.


The graph information of MGIVchHai1 components from AFOQ01000004
Incomplete gene list of MGIVchHai1 from AFOQ01000004
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1VCHE39_053075763..76239 [-], 477hypothetical protein
2VCHE39_053176564..76680 [-], 117hypothetical protein
3VCHE39_053276709..79117 [-], 2409eukaryotic and archaeal DNA primase small subunit
4cro79143..79448 [-], 306transcriptional regulator, XRE family
5VCHE39_053479546..79848 [-], 303hypothetical protein
6VCHE39_053580044..80370 [-], 327hypothetical protein
7VCHE39_053680384..81520 [-], 1137phage integraseIntegrase 
8VCHE39_053781950..82816 [-], 867hypothetical protein
9rph82980..83696 [+], 717ribonuclease PH
10pyrE83896..84537 [+], 642orotate phosphoribosyltransferase
11msbB84624..85601 [-], 978lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] experimental in_silico
(2) Hasan NA; Choi SY; Eppinger M; Clark PW; Chen A; Alam M; Haley BJ; Taviani E; Hine E; Su Q; Tallon LJ; Prosper JB; Furth K; Hoq MM; Li H; Fraser-Liggett CM; Cravioto A; Huq A; Ravel J; Cebula TA; Colwell RR (2012). Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci U S A. 109(29):E2010-7. [PudMed:22711841]
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU