 ICEberg ID | 168_IME |
Name  | MGIVchHai1  |
| Family | - |
| Organism | Vibrio cholerae HE39 |
| Size (bp) | - |
| GC content [Genome] (%) | |
| Insertion site | - |
| Function | - |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | AFOQ01000004 (partical IME sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of MGIVchHai1 components from AFOQ01000004 | |||||
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| Incomplete gene list of MGIVchHai1 from AFOQ01000004 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | VCHE39_0530 | 75763..76239 [-], 477 | hypothetical protein | ||
| 2 | VCHE39_0531 | 76564..76680 [-], 117 | hypothetical protein | ||
| 3 | VCHE39_0532 | 76709..79117 [-], 2409 | eukaryotic and archaeal DNA primase small subunit | ||
| 4 | cro | 79143..79448 [-], 306 | transcriptional regulator, XRE family | ||
| 5 | VCHE39_0534 | 79546..79848 [-], 303 | hypothetical protein | ||
| 6 | VCHE39_0535 | 80044..80370 [-], 327 | hypothetical protein | ||
| 7 | VCHE39_0536 | 80384..81520 [-], 1137 | phage integrase | Integrase | |
| 8 | VCHE39_0537 | 81950..82816 [-], 867 | hypothetical protein | ||
| 9 | rph | 82980..83696 [+], 717 | ribonuclease PH | ||
| 10 | pyrE | 83896..84537 [+], 642 | orotate phosphoribosyltransferase | ||
| 11 | msbB | 84624..85601 [-], 978 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] 
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| (2) Hasan NA; Choi SY; Eppinger M; Clark PW; Chen A; Alam M; Haley BJ; Taviani E; Hine E; Su Q; Tallon LJ; Prosper JB; Furth K; Hoq MM; Li H; Fraser-Liggett CM; Cravioto A; Huq A; Ravel J; Cebula TA; Colwell RR (2012). Genomic diversity of 2010 Haitian cholera outbreak strains. Proc Natl Acad Sci U S A. 109(29):E2010-7. [PudMed:22711841] |
| experimental literature |
| in silico analysis literature |