ICEberg
I. Information of IME
ICEberg ID167_IME
Name MGIPspArc1 This is a predicted IME derived from literature
Family-
OrganismPseudoalteromonas sp. 4mar
Size (bp)25870 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceNZ_BADU01000066 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MGIPspArc1 is not available.


The graph information of MGIPspArc1 components from NZ_BADU01000066
Incomplete gene list of MGIPspArc1 from NZ_BADU01000066
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1P20311_RS0734011389..12075 [-], 687hypothetical protein
2P20311_RS0734512543..14951 [-], 2409DNA helicase
3P20311_RS0735014977..15348 [-], 372transcriptional regulator
4P20311_RS0735515448..15753 [-], 306type II toxin-antitoxin system HigB family toxin
5P20311_RS0736015945..16283 [-], 339hypothetical protein
6P20311_RS0736516285..17535 [-], 1251site-specific integraseIntegrase 
7P20311_RS0737017851..18711 [-], 861YicC family protein
8P20311_RS0737518892..19605 [+], 714ribonuclease PH
9P20311_RS0738019620..20264 [+], 645orotate phosphoribosyltransferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] experimental in_silico
(2) Bian F; Xie BB; Qin QL; Shu YL; Zhang XY; Yu Y; Chen B; Chen XL; Zhou BC; Zhang YZ (2012). Genome sequences of six Pseudoalteromonas strains isolated from Arctic sea ice. J Bacteriol. 194(4):908-9. [PudMed:22275105] in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU