ICEberg
I. Information of IME
ICEberg ID166_IME
Name MGIMamKor1 This is a predicted IME derived from literature
Family-
OrganismMethylophaga aminisulfidivorans MP
Size (bp)18500 bp
GC content [Genome] (%)
Insertion site-
Function-
Species that IME can be transferred to-
Nucleotide SequenceNZ_AFIG01000003 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of MGIMamKor1 is not available.


The graph information of MGIMamKor1 components from NZ_AFIG01000003
Incomplete gene list of MGIMamKor1 from NZ_AFIG01000003
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1MAMP_RS14240555772..556458 [-], 687hypothetical protein
2MAMP_RS14245557221..557541 [+], 321XRE family transcriptional regulator
3MAMP_RS14250557534..558763 [+], 1230type II toxin-antitoxin system HipA family toxin
4MAMP_RS14255558985..559323 [-], 339hypothetical protein
5MAMP_RS14260559325..560581 [-], 1257site-specific integraseIntegrase 
6MAMP_RS15980560612..560803 [-], 192hypothetical protein
7MAMP_RS14265560933..561787 [-], 855YicC family protein
8MAMP_RS14270561918..562637 [+], 720ribonuclease PH
9MAMP_RS14275562634..563239 [+], 606non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
10MAMP_RS14280563267..563920 [+], 654hypothetical protein
11MAMP_RS14285563920..565074 [+], 1155oxygen-independent coproporphyrinogen III oxidase-like protein
12MAMP_RS14290565115..565405 [+], 291hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461] experimental in_silico
(2) Kim HG; Doronina NV; Trotsenko YA; Kim SW (2007). Methylophaga aminisulfidivorans sp. nov., a restricted facultatively methylotrophic marine bacterium. Int J Syst Evol Microbiol. 57(Pt 9):2096-101. [PudMed:17766878]
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU