ICEberg

IME
Gene list
Download
References

I. Information of IME

ICEberg ID	165_IME
Name	MGIAspKor1
Family	-
Organism	Alteromonas sp. SN2
Size (bp)	23371 bp
GC content [Genome] (%)
Insertion site	-
Function	-
Species that IME can be transferred to	-
Nucleotide Sequence	CP002339 (partical IME sequence)
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of MGIAspKor1 is not available.

The graph information of MGIAspKor1 components from CP002339

Incomplete gene list of MGIAspKor1 from CP002339
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	ambt_21915	4906790..4907251 [+], 462	hypothetical protein
2	ambt_21920	4907305..4907487 [+], 183	hypothetical protein
3	ambt_21925	4907635..4908447 [+], 813	hypothetical protein
4	ambt_21930	4908473..4908730 [-], 258	sirA protein
5	pyrE	4908733..4909374 [-], 642	orotate phosphoribosyltransferase
6	rph	4909384..4910097 [-], 714	ribonuclease PH
7	ambt_21945	4910385..4911248 [+], 864	hypothetical protein
8	ambt_21950	4911600..4912856 [+], 1257	phage integrase family site specific recombinase	Integrase
9	ambt_21955	4912858..4913196 [+], 339	hypothetical protein
10	ambt_21960	4913392..4913694 [+], 303	hypothetical protein
11	ambt_21965	4913726..4914097 [+], 372	helix-turn-helix domain-containing protein
12	ambt_21980	4915161..4915841 [+], 681	hypothetical protein

Flanking regions

Gene may contribute to site-specific recombination

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	1	Fasta

(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461]

(2) Math RK; Jin HM; Kim JM; Hahn Y; Park W; Madsen EL; Jeon CO (2012). Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism. PLoS One. 7(4):e35784. [PudMed:22563400]

experimental literature

in silico analysis literature