ICEberg

IME
Gene list
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References

I. Information of IME

ICEberg ID	164_IME
Name	MGIAmaMed1
Family	-
Organism	Alteromonas macleodii Deep ecotype
Size (bp)	24786 bp
GC content [Genome] (%)
Insertion site	-
Function	-
Species that IME can be transferred to	-
Nucleotide Sequence	CP001103 (partical IME sequence)
Putative oriT region	-
Putative relaxase	-

II. IME interaction with ICE/CIME/Plasmids

The interaction information of MGIAmaMed1 is not available.

The graph information of MGIAmaMed1 components from CP001103

Incomplete gene list of MGIAmaMed1 from CP001103
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	MADE_1010940	2439606..2440283 [+], 678	phosphoglycolate phosphatase
2	MADE_1010945	2440421..2441635 [+], 1215	molybdopterin biosynthesis protein MoeA
3	MADE_1010950	2441766..2443139 [+], 1374	multidrug transporter MatE
4	MADE_1010955	2443157..2444026 [-], 870	isoquinoline 1-oxidoreductase
5	MADE_000001020675	4480899..1626 [+], -4479272	chromosomal replication initiator protein DnaA
6	MADE_1010960	2444046..2445227 [-], 1182	VWA containing CoxE family protein
7	MADE_1010965	2445227..2446063 [-], 837	ATPase AAA
8	MADE_1010970	2446334..2447299 [+], 966	cysteine synthase A
9	MADE_1010975	2447543..2448001 [+], 459	hypothetical protein
10	MADE_1010980	2448241..2448423 [+], 183	hypothetical protein
11	MADE_000001022135	2448891..2449031 [-], 141	transposase ISCps8
12	MADE_1010985	2449024..2450064 [-], 1041	transposase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	2	Fasta

(1) Daccord A; Ceccarelli D; Rodrigue S; Burrus V (2013). Comparative analysis of mobilizable genomic islands. J Bacteriol. 195(3):606-14. [PudMed:23204461]

(2) Lopez-Lopez A; Bartual SG; Stal L; Onyshchenko O; Rodriguez-Valera F (2005). Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea. Environ Microbiol. 7(5):649-59. [PudMed:15819847]

experimental literature

in silico analysis literature