ICEberg
I. Information of IME
ICEberg ID163_IME
Name IncP island  This is a predicted IME derived from literature
Family-
OrganismBrucella suis
Size (bp)18228 bp
GC content [Genome] (%)
Insertion site3′ of guaA (GMP synthase)
Functionaac(2′)-IIa (kasugamycin)
Species that IME can be transferred to-
Nucleotide SequenceAE014292 (complete IME sequence in this contig)
Replicon-
Coordinates343695..361343
Putative oriT region -
Putative relaxase coordinates: 352317..354269; BRA0373  Family:  MOBP


II. IME interaction with ICE/CIME/Plasmids

The Interaction Network among ICE/IME/CIME/plasmid


Detailed Informatioin of the Interaction Network
# IME  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1IncP island  RP4 [IncP plasmid] insolicoin trans - - -
2IncP island  R751 [IncP plasmid] insolicoin trans - - -
3IncP island  pNGR234a [IncP plasmid] insolicoin trans - - -
4IncP island  R18 [IncP plasmid] insolicoin trans - - -

insolico This is a putative interactioin


The graph information of IncP island  components from AE014292
Complete gene list of IncP island  from AE014292
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1BRA0358339051..340340 [+], 1290sun protein, putative
2BRA0359340631..341086 [+], 456conserved hypothetical protein
3BRA0360341083..341715 [+], 633MTA/SAH nucleosidase family protein
4guaA341824..343386 [+], 1563GMP synthase
5BRA0362343695..344903 [+], 1209site-specific recombinase, phage integrase familyIntegrase 
6BRA0363345188..345418 [+], 231DNA-binding protein, putative
7BRA0364345499..346557 [+], 1059repA-related protein
8BRA0365347606..347932 [-], 327hypothetical protein
9BRA0366347935..349578 [-], 1644trbL proteinTrbL, T4SS component 
10BRA0367349581..349763 [-], 183hypothetical protein
11BRA0368349766..350557 [-], 792trbJ proteinTrbJ, T4SS component 
12BRA0369350655..350807 [+], 153hypothetical protein
13BRA0370350825..351049 [-], 225hypothetical protein
14BRA0371351052..351270 [-], 219traC protein
15BRA0372351940..352320 [+], 381traJ protein
16BRA0373352317..354269 [+], 1953traI protein, putativeRelaxase 
17BRA0374354676..356100 [-], 1425hypothetical protein
18BRA0375356254..357279 [-], 1026hypothetical protein
19BRA0376357313..358038 [-], 726hypothetical protein
20BRA0377358217..359938 [-], 1722conserved hypothetical protein
21BRA0378360180..361004 [-], 825hypothetical protein
22BRA0379361149..361343 [-], 195DNA-damage-inducible protein J, putative
23BRA0380361753..361938 [+], 186hypothetical protein
24BRA0381362050..362598 [+], 549membrane antigen, putative
25BRA0382362602..363000 [+], 399hypothetical protein
26BRA0383363007..363843 [+], 837iron permease, FTR1 family
27BRA0384363804..365237 [+], 1434conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins18Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]
(3) Lavigne JP; Vergunst AC; Bourg G; O'Callaghan D (2005). The IncP island in the genome of Brucella suis 1330 was acquired by site-specific integration. Infect Immun. 73(11):7779-83. [PudMed:16239585]
 

Genomics & Bioinformatics Group in MML, SJTU