 ICEberg ID | 14_IME |
Name  | IME_SagNEM316_rpsI  |
| Family | - |
| Organism | Streptococcus agalactiae NEM316 |
| Size (bp) | - |
| GC content [Genome] (%) | |
| Insertion site | - |
| Function | erm(B) |
| Species that IME can be transferred to | - |
| Nucleotide Sequence | NC_004368.1 (partical IME sequence) |
| Putative oriT region | - |
| Putative relaxase | - |
The graph information of IME_SagNEM316_rpsI components from NC_004368 | |||||
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| Incomplete gene list of IME_SagNEM316_rpsI from NC_004368 | |||||
| # | Gene | Coordinates [+/-], size (bp) | Product | *Reannotation | |
| 1 | GBS_RS01300 | 227986..228504 [+], 519 | hypothetical protein | ||
| 2 | GBS_RS01305 | 228597..229457 [+], 861 | DegV family protein | ||
| 3 | GBS_RS11145 | 229590..229688 [+], 99 | hypothetical protein | ||
| 4 | GBS_RS11150 | 229803..229922 [+], 120 | hypothetical protein | ||
| 5 | GBS_RS01310 | 229995..230117 [+], 123 | helix-turn-helix domain-containing protein | ||
| 6 | GBS_RS01315 | 230442..231608 [-], 1167 | IS30-like element ISSag9 family transposase | ||
| 7 | GBS_RS01320 | 231909..232355 [+], 447 | 50S ribosomal protein L13 | ||
| 8 | GBS_RS01325 | 232376..232768 [+], 393 | 30S ribosomal protein S9 | ||
| 9 | GBS_RS01330 | 232896..234050 [-], 1155 | site-specific integrase | Integrase | |
| 10 | GBS_RS01335 | 234119..234670 [-], 552 | XRE family transcriptional regulator | ||
| 11 | GBS_RS01340 | 234835..235128 [+], 294 | hypothetical protein | ||
| 12 | GBS_RS01345 | 235269..235550 [+], 282 | DNA-binding protein | ||
| 13 | GBS_RS01350 | 235556..235882 [+], 327 | hypothetical protein | ||
| 14 | GBS_RS01355 | 235886..236527 [+], 642 | hypothetical protein | ||
| 15 | GBS_RS01360 | 236699..236836 [+], 138 | hypothetical protein | ||
| 16 | GBS_RS01365 | 236827..237615 [+], 789 | hypothetical protein | ||
| 17 | GBS_RS01370 | 237719..238153 [+], 435 | hypothetical protein | ||
 Flanking regions |
 Gene may contribute to site-specific recombination |
| (1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361] |
| (2) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865] |
(3) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] 
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| experimental literature |
| in silico analysis literature |