ICEberg
I. Information of IME
ICEberg ID14_IME
Name IME_SagNEM316_rpsI  This is a predicted IME derived from literature
Family-
OrganismStreptococcus agalactiae NEM316
Size (bp)-
GC content [Genome] (%)
Insertion site-
Functionerm(B)
Species that IME can be transferred to-
Nucleotide SequenceNC_004368.1 (partical IME sequence)
Putative oriT region -
Putative relaxase -


II. IME interaction with ICE/CIME/Plasmids

The interaction information of IME_SagNEM316_rpsI is not available.


The graph information of IME_SagNEM316_rpsI components from NC_004368
Incomplete gene list of IME_SagNEM316_rpsI from NC_004368
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1GBS_RS01300227986..228504 [+], 519hypothetical protein
2GBS_RS01305228597..229457 [+], 861DegV family protein
3GBS_RS11145229590..229688 [+], 99hypothetical protein
4GBS_RS11150229803..229922 [+], 120hypothetical protein
5GBS_RS01310229995..230117 [+], 123helix-turn-helix domain-containing protein
6GBS_RS01315230442..231608 [-], 1167IS30-like element ISSag9 family transposase
7GBS_RS01320231909..232355 [+], 44750S ribosomal protein L13
8GBS_RS01325232376..232768 [+], 39330S ribosomal protein S9
9GBS_RS01330232896..234050 [-], 1155site-specific integraseIntegrase 
10GBS_RS01335234119..234670 [-], 552XRE family transcriptional regulator
11GBS_RS01340234835..235128 [+], 294hypothetical protein
12GBS_RS01345235269..235550 [+], 282DNA-binding protein
13GBS_RS01350235556..235882 [+], 327hypothetical protein
14GBS_RS01355235886..236527 [+], 642hypothetical protein
15GBS_RS01360236699..236836 [+], 138hypothetical protein
16GBS_RS01365236827..237615 [+], 789hypothetical protein
17GBS_RS01370237719..238153 [+], 435hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins1Fasta
(1) Guedon G; Libante V; Coluzzi C; Payot S; Leblond-Bourget N (2017). The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems. Genes (Basel). 8(11). [PudMed:29165361]
(2) Coluzzi C; Guedon G; Devignes MD; Ambroset C; Loux V; Lacroix T; Payot S; Leblond-Bourget N (2017). A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. 0.640972222. [PudMed:28373865]
(3) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU