ICEberg

IME
Gene list
Download
References

I. Information of IME

ICEberg ID	10_IME
Name	ICE6180-RD.1
Family	-
Organism	Streptococcus pyogenes MGAS6180
Size (bp)	10545
GC content [Genome] (%)
Insertion site	3′ of rumA (23S rRNA methyltransferase)
Function	-
Species that IME can be transferred to	-
Nucleotide Sequence	CP000056 (complete IME sequence in this genome)
Replicon	-
Genome coordinates	1081126..1091670
Putative oriT region	-
Putative relaxase	coordinates: 1085573..1086802; M28_Spy1083 Family: MOB_Q

II. IME interaction with ICE/CIME/Plasmids

The interaction information of ICE6180-RD.1 is not available.

Complete gene list of ICE6180-RD.1 from CP000056
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	M28_Spy1075	1076524..1077744 [-], 1221	transporter, MFS superfamily
2	M28_Spy1076	1078046..1079602 [+], 1557	hypothetical cytosolic protein
3	M28_Spy1077	1079707..1080108 [-], 402	thioesterase superfamily protein
4	M28_Spy1078	1080193..1080705 [-], 513	phosphorylase, Pnp/Udp family
5	M28_Spy1079	1081126..1082805 [-], 1680	site-specific recombinase	Integrase
6	M28_Spy1080	1082902..1083063 [-], 162	hypothetical protein
7	M28_Spy1081	1083761..1084489 [-], 729	putative phage-associated protein
8	M28_Spy1082	1084615..1085142 [-], 528	hypothetical protein
9	M28_Spy1083	1085573..1086802 [-], 1230	nickase	Relaxase
10	M28_Spy1084	1087527..1087856 [-], 330	hypothetical protein
11	M28_Spy1085	1088343..1088768 [-], 426	transcriptional regulator, MarR family
12	M28_Spy1086	1089612..1089902 [-], 291	hypothetical protein
13	M28_Spy1087	1090007..1090624 [-], 618	hypothetical cytosolic protein
14	M28_Spy1088	1090692..1091114 [-], 423	hypothetical protein
15	M28_Spy1089	1091134..1091670 [-], 537	hypothetical cytosolic protein
16	M28_Spy1090	1091826..1093493 [-], 1668	tRNA (uracil-5-)-methyltransferase
17	M28_Spy1091	1093542..1094993 [-], 1452	transcriptional regulator, LytR family
18	aroK	1095201..1095692 [-], 492	shikimate kinase

Flanking regions

Gene may contribute to site-specific recombination

Gene may play role in conjugative transfer

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	11	Fasta

(1) Bellanger X; Payot S; Leblond-Bourget N; Guedon G (2014). Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 38(4):720-60. [PudMed:24372381]

(2) Beres SB; Musser JM (2007). Contribution of exogenous genetic elements to the group A Streptococcus metagenome. PLoS One. 2(8):e800. [PudMed:17726530]