ICEberg
I. Information of CIME
ICEberg ID8_CIME
NameCIME_515_rpmG This is a predicted CIME derived from literature
Family-
OrganismStreptococcus agalactiae 515
Size (bp)
GC content [Genome] (%)
Insertion siterpmG
Function-
Species that CIME can be transferred to-
Nucleotide SequenceAAJP01000119; AAJP01000008 (partical CIME sequence)


II. CIME interaction with ICE/IME

The interaction information of CIME_515_rpmG is not available.


The graph information of CIME_515_rpmG components from AAJP01000119
Incomplete gene list of CIME_515_rpmG from AAJP01000119
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1SAL_222035..217 [-], 183Unknown
2SAL_2221247..585 [-], 339putative cadmium efflux system accessory protein
3SAL_2222597..1211 [-], 615cadmium resistance protein
4rpmG1503..1652 [-], 150ribosomal protein L33
5rpmF1668..1850 [-], 183ribosomal protein L32
6SAL_22252195..2273 [+], 79histidyl-tRNA synthetase

The graph information of CIME_515_rpmG components from AAJP01000008
Incomplete gene list of CIME_515_rpmG from AAJP01000008
#GeneCoordinates [+/-], size (bp) Product *Reannotation 
1SAL_21511..1366 [+], 1366Unknown
2SAL_21521687..2136 [+], 450conserved hypothetical protein
3SAL_21532338..2658 [+], 321Unknown
4SAL_21542658..3758 [+], 1101UnknownT4CP 
5SAL_21553755..4360 [+], 606conserved hypothetical protein
6SAL_21564566..5171 [+], 606Plasmid replication protein
7SAL_21575164..5412 [+], 249conserved hypothetical protein
8SAL_21585502..6767 [+], 1266putative integrase/recombinase, phage integrase familyIntegrase 
9SAL_21597115..7786 [+], 672conserved hypothetical protein
10SAL_21607871..8542 [+], 672DNA-binding response regulator
11SAL_21618526..9890 [+], 1365sensor histidine kinase
12SAL_216210000..11553 [-], 1554putative membrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences2Fasta
Proteins10Fasta
(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU