I. Information of CIME

ICEberg ID	4_CIME
Name	CIME_18RS21_tRNAThr
Family	-
Organism	Streptococcus agalactiae 18RS21
Size (bp)
GC content [Genome] (%)
Insertion site	tRNAThr
Function	-
Species that CIME can be transferred to	-
Nucleotide Sequence	AAJO01000045; AAJO01000163; AAJO01000155; AAJO01000004 (partical CIME sequence)

II. CIME interaction with ICE/IME

The interaction information of CIME_18RS21_tRNA^Thr is not available.

The graph information of CIME_18RS21_tRNAThr components from AAJO01000045
Incomplete gene list of CIME_18RS21_tRNAThr from AAJO01000045
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	SAJ_0529	6883..7272 [+], 390	Pyridoxamine 5'-phosphate oxidase family
2	SAJ_0530	7316..7747 [-], 432	Bacterial transcription activator, effector binding domain superfamily
3	SAJ_0531	7986..8270 [-], 285	conserved hypothetical protein
4	SAJ_0532	8357..8674 [-], 318	Carboxymuconolactone decarboxylase
5	SAJ_0533	8698..9093 [-], 396	4-carboxymuconolactone decarboxylase
6	SAJ_0534	9103..9492 [-], 390	transcriptional regulator, MerR family
7	SAJ_0535	9508..10545 [-], 1038	alcohol dehydrogenase, zinc-containing
8	SAJ_0536	10655..11509 [-], 855	oxidoreductase, aldo/keto reductase family
9	czcD-like	11594..12184 [-], 591	cation efflux system protein
10	SAJ_0538	12460..12843 [+], 384	degenerate transposase
11	SAJ_0539	12876..13265 [+], 390	Transposase (IS4 family)

The graph information of CIME_18RS21_tRNAThr components from AAJO01000163
Incomplete gene list of CIME_18RS21_tRNAThr from AAJO01000163
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	SAJ_0540	268..657 [+], 390	Transposase (IS4 family)
2	SAJ_0541	842..1366 [+], 525	transcriptional regulator, TetR family
3	SAJ_0542	1561..2647 [-], 1087	transcriptional regulator, AraC family

The graph information of CIME_18RS21_tRNAThr components from AAJO01000155
Incomplete gene list of CIME_18RS21_tRNAThr from AAJO01000155
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	SAJ_0545	187..375 [-], 189	conserved hypothetical protein
2	SAJ_0544	372..665 [-], 294	EF0032
3	SAJ_0543	1377..2939 [-], 1563	rib protein

The graph information of CIME_18RS21_tRNAThr components from AAJO01000004
Incomplete gene list of CIME_18RS21_tRNAThr from AAJO01000004
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	SAJ_0546	1..337 [+], 337	lipoprotein, putative
2	int	989..1288 [+], 300	integrase	Integrase
3	SAJ_0549	1565..1813 [-], 249	methyltransferase
4	SAJ_0550	1847..2062 [-], 216	methyltransferase
5	SAJ_0551	2710..2964 [+], 255	conserved hypothetical protein
6	SAJ_0552	3073..3384 [+], 312	conserved hypothetical protein
7	SAJ_0553	3652..4221 [+], 570	acetyltransferase, GNAT family
8	SAJ_0554	4319..4903 [+], 585	acetyltransferase, GNAT family
9	SAJ_0555	4900..5466 [+], 567	conserved hypothetical protein

Flanking regions

Gene may contribute to site-specific recombination

(1) Brochet M; Couve E; Glaser P; Guedon G; Payot S (2008). Integrative conjugative elements and related elements are major contributors to the genome diversity of Streptococcus agalactiae. J Bacteriol. 190(20):6913-7. [PudMed:18708498]

experimental literature

in silico analysis literature