ICEberg

CIME
Gene list
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References

I. Information of CIME

ICEberg ID	227_CIME
Name	CIME302
Family	-
Organism	Streptococcus thermophilus CNRZ302
Size (bp)	13147
GC content [Genome] (%)
Insertion site	fda
Function	-
Species that CIME can be transferred to	-
Nucleotide Sequence	AJ586569 (complete CIME sequence in this GenBank file)
Replicon	-
Coordinates	154..13301

II. CIME interaction with ICE/IME

The interaction information of CIME302 is not available.

The graph information of CIME302 components from AJ586569

Complete gene list of CIME302 from AJ586569
#	Gene	Coordinates [+/-], size (bp)	Product	*Reannotation
1	-	616..1800 [-], 1185	putative Abi-alpha protein
2	gst	2288..3502 [+], 1215	putative glutamate/aspartate-proton symport protein
3	-	3522..4451 [+], 930	putative carboxylate-amine/thiol ligase
4	-	5077..5280 [-], 204	putative transmembrane protein
5	-	5283..5618 [-], 336	hypothetical protein
6	-	5602..6813 [-], 1212	hypothetical protein
7	-	6973..7266 [-], 294	hypothetical protein
8	-	7259..7657 [-], 399	hypothetical protein
9	-	7791..8162 [-], 372	hypothetical protein
10	-	8743..9042 [+], 300	hypothetical protein
11	-	9082..10299 [-], 1218	putative endonuclease
12	-	10308..10772 [-], 465	hypothetical protein
13	-	11040..12587 [+], 1548	putative cytosine-specific methyltransferase
14	-	12738..13037 [-], 300	hypothetical protein
15	-	13282..13371 [-], 90	putative fructose-1,6-diphoshate aldolase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	14	Fasta

(1) Carraro N; Burrus V (2014). Biology of Three ICE Families: SXT/R391, ICEBs1, and ICESt1/ICESt3. Microbiol Spectr. 2(6). [PudMed:26104437]

(2) Pavlovic G; Burrus V; Gintz B; Decaris B; Guedon G (2004). Evolution of genomic islands by deletion and tandem accretion by site-specific recombination: ICESt1-related elements from Streptococcus thermophilus. Microbiology. 150(Pt 4):759-74. [PudMed:15073287]

experimental literature