ICEberg
I. Information of ICE
ICEberg ID975
Name ICEKd33394 This is a predicted ICE derived from literature
OrganismKingella denitrificans ATCC 33394
Size (bp)-
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAEWV01000015 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEKd33394 is not available.



The graph information of ICEKd33394 components from AEWV01000015
Incomplete gene list of ICEKd33394 from AEWV01000015
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1HMPREF9098_082018144..19109 [+], 966glycosyltransferase family 52
2HMPREF9098_082119106..20086 [+], 981glycosyltransferase, group 2 family protein
3orn20116..20664 [+], 549exonuclease
4HMPREF9098_082320702..20977 [-], 276hypothetical protein
5HMPREF9098_082421034..21840 [+], 807transglycosylase SLT domain proteinVirB1, T4SS component 
6HMPREF9098_082521874..22305 [+], 432hypothetical protein
7HMPREF9098_082622317..22754 [+], 438type IV secretory pathway, VirB3-like proteinVirB3, T4SS component 
8HMPREF9098_082722666..25221 [+], 2556type IV secretion/conjugal transfer ATPase, VirB4 familyVirB4, T4SS component 
9HMPREF9098_082825323..25961 [+], 639type IV secretion system proteinVirB5, T4SS component 
10HMPREF9098_082925961..26983 [+], 1023TrbL/VirB6 plasmid conjugal transfer protein
11HMPREF9098_083027015..27494 [+], 480hypothetical protein
12HMPREF9098_083127589..27723 [+], 135hypothetical protein
13HMPREF9098_083227713..28456 [+], 744VirB8 proteinVirB8, T4SS component 
14HMPREF9098_083328469..29308 [+], 840putative P-type conjugative transfer protein VirB9VirB9, T4SS component 
15HMPREF9098_083429305..30579 [+], 1275bacterial conjugation TrbI-like proteinVirB10, T4SS component 
16virB1130665..31759 [+], 1095P-type DNA transfer ATPase VirB11VirB11, T4SS component 
17HMPREF9098_083631912..32382 [+], 471hypothetical protein
18HMPREF9098_083732437..32763 [+], 327hypothetical protein
19HMPREF9098_083832742..33446 [+], 705hypothetical protein
20HMPREF9098_083933573..33770 [+], 198hypothetical protein
21HMPREF9098_084033781..34272 [+], 492hypothetical protein
22HMPREF9098_084134275..34439 [+], 165hypothetical protein
23HMPREF9098_084234519..35343 [+], 825hypothetical protein
24HMPREF9098_084335331..35705 [+], 375hypothetical protein
25HMPREF9098_084435837..36100 [+], 264hypothetical protein
26HMPREF9098_084536057..36398 [-], 342hypothetical protein
27ssb36443..36856 [+], 414single-strand binding family protein
28HMPREF9098_084736951..38990 [+], 2040TraG/TraD family proteinVirD4, T4SS component 
29HMPREF9098_084839010..44574 [+], 5565toprim domain protein
30HMPREF9098_084944673..45791 [+], 1119hypothetical protein
31rdgC45788..46687 [+], 900recombination-associated protein RdgC
32HMPREF9098_085146759..47289 [+], 531bacterial mobilization protein MobC
33HMPREF9098_085247792..48169 [+], 378hypothetical protein
34HMPREF9098_085348385..49116 [-], 732hypothetical protein
35dcm49896..51011 [+], 1116DNA (cytosine-5-)-methyltransferase
36HMPREF9098_085551017..52768 [+], 1752hypothetical protein
37HMPREF9098_085653526..54167 [+], 642phage protein Gp37/Gp68
38HMPREF9098_085754164..55486 [+], 1323hypothetical protein
39HMPREF9098_085855703..55882 [+], 180hypothetical protein
40HMPREF9098_085955928..56098 [+], 171hypothetical protein
41HMPREF9098_086056066..56878 [-], 813hypothetical protein
42cro56890..57111 [-], 222regulatory protein cro
43HMPREF9098_086257221..57874 [+], 654DNA-binding helix-turn-helix protein
44HMPREF9098_086357994..58293 [+], 300putative toxin-antitoxin system, toxin component
45hipB58295..58699 [+], 405zinc finger/helix-turn-helix protein, YgiT family
46HMPREF9098_086558701..58868 [+], 168hypothetical protein
47HMPREF9098_086658825..59193 [+], 369toxin-antitoxin system, toxin component, RelE family
48HMPREF9098_086759190..59504 [+], 315DNA-binding helix-turn-helix protein
49HMPREF9098_086859569..59967 [-], 399toxin-antitoxin system, antitoxin component, HicB family
50higA60019..60336 [-], 318addiction module antidote protein HigA
51HMPREF9098_087060349..60630 [-], 282toxin-antitoxin system, toxin component, RelE family
52HMPREF9098_087160691..60813 [+], 123hypothetical protein
53HMPREF9098_087260851..61354 [+], 504hypothetical protein
54HMPREF9098_087361344..61802 [-], 459hypothetical protein
55HMPREF9098_087461801..62424 [+], 624hypothetical protein
56HMPREF9098_087562421..63110 [+], 690hypothetical protein
57HMPREF9098_087663249..63398 [+], 150hypothetical protein
58HMPREF9098_087763367..63630 [+], 264hypothetical protein
59vapD63676..64119 [+], 444Virulence-associated protein D (VapD) conserved region
60HMPREF9098_087964452..65339 [+], 888AntA/AntB antirepressor
61trbM65625..66167 [+], 543TrbMMagB14, T4SS component 
62HMPREF9098_088166176..66361 [-], 186hypothetical protein
63traL66347..67090 [+], 744putative conjugal transfer protein TraL
64HMPREF9098_088367077..67625 [+], 549hypothetical protein
65HMPREF9098_088467602..68033 [-], 432hypothetical protein
66pyrE69329..69973 [-], 645orotate phosphoribosyltransferase
67pnp70066..72183 [-], 2118polyribonucleotide nucleotidyltransferase
68HMPREF9098_088772296..72463 [-], 168hypothetical protein
69rppH72520..73065 [-], 546hydrolase, NUDIX family
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins61Fasta
(1) Bidet P; Basmaci R; Guglielmini J; Doit C; Jost C; Birgy A; Bonacorsi S (2016). Genome Analysis of Kingella kingae Strain KWG1 Reveals How a beta-Lactamase Gene Inserted in the Chromosome of This Species. Antimicrob Agents Chemother. 60(1):703-8. [PubMed:26574009] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU