ICEberg
I. Information of ICE
ICEberg ID974
Name ICEhptfs4c This is a predicted ICE derived from literature
OrganismHelicobacter pylori SouthAfrica7
Size (bp)41294
GC content [Genome] (%)33.41
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_017361 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1527381..1568674 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEhptfs4c is not available.



The graph information of ICEhptfs4c components from NC_017361
Complete gene list of ICEhptfs4c from NC_017361
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1HPSA_RS072401523195..1524238 [+], 1044rod shape-determining protein
2HPSA_RS072451524242..1524994 [+], 753rod shape-determining protein MreC
3HPSA_RS072551527440..1528219 [+], 780hypothetical protein
4HPSA_RS072601528239..1528532 [+], 294hypothetical protein
5HPSA_RS072651528539..1530065 [+], 1527hypothetical protein
6HPSA_RS072701530062..1530364 [+], 303hypothetical proteinVirB2, T4SS component 
7HPSA_RS072751530365..1530631 [+], 267hypothetical proteinVirB3, T4SS component 
8HPSA_RS072801530624..1533047 [+], 2424VirB4 family type IV secretion/conjugal transfer ATPaseVirB4, T4SS component 
9HPSA_RS072851533050..1533940 [+], 891type IA DNA topoisomerase
10HPSA_RS072901533988..1534404 [-], 417IS200/IS605 family transposase
11HPSA_RS072951534441..1535769 [+], 1329transposase
12HPSA_RS073001535729..1535839 [+], 111hypothetical protein
13HPSA_RS073051535817..1537052 [+], 1236type IA DNA topoisomerase
14HPSA_RS073101537169..1538332 [+], 1164hypothetical proteinVirB8, T4SS component 
15HPSA_RS073151538332..1539864 [+], 1533conjugal transfer proteinVirB9, T4SS component 
16HPSA_RS073201539864..1541123 [+], 1260competence proteinVirB10, T4SS component 
17HPSA_RS073251541193..1541486 [+], 294hypothetical protein
18HPSA_RS073301541479..1541799 [+], 321hypothetical protein
19HPSA_RS073351541802..1542104 [+], 303hypothetical protein
20HPSA_RS073401542101..1543072 [+], 972hypothetical proteinVirB11, T4SS component 
21HPSA_RS073451543069..1543542 [+], 474hypothetical protein
22HPSA_RS073501543544..1543801 [+], 258hypothetical protein
23HPSA_RS073551543901..1546033 [+], 2133type IV secretory system conjugative DNA transfer family proteinVirD4, T4SS component 
24HPSA_RS073601546254..1546550 [-], 297hypothetical protein
25HPSA_RS073651546606..1546917 [-], 312hypothetical protein
26HPSA_RS073701546876..1548873 [+], 1998hypothetical protein
27HPSA_RS073751548900..1549169 [-], 270hypothetical protein
28HPSA_RS073801549247..1549909 [-], 663ParA family protein
29HPSA_RS073851550176..1558584 [-], 8409helicase
30HPSA_RS073901558781..1559788 [+], 1008hypothetical protein
31HPSA_RS074001561161..1563356 [+], 2196hypothetical protein
32HPSA_RS074051563366..1564766 [+], 1401hypothetical protein
33HPSA_RS074101564818..1565096 [+], 279hypothetical protein
34HPSA_RS074151565098..1566360 [+], 1263P-type conjugative transfer protein TrbL
35HPSA_RS074201566433..1567116 [+], 684hypothetical protein
36HPSA_RS074251567195..1568268 [-], 1074integraseIntegrase 
37HPSA_RS082951569269..1570339 [-], 1071site-specific DNA-methyltransferase
38HPSA_RS083001570323..1571738 [-], 1416site-specific DNA-methyltransferase
39HPSA_RS074401571809..1572450 [+], 642DNA-binding response regulator
40HPSA_RS074451572431..1573618 [+], 1188sensor histidine kinase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins34Fasta
(1) Delahay RM; Croxall NJ; Stephens AD (2018). Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements. Mob DNA. 9:05. [PubMed:29416569] in_silico
(2) Clewell DB; Weaver KE; Dunny GM; Coque TM; Francia MV; Hayes F; Fischer W; Breithaupt U; Kern B; Smith SI; Spicher C; Haas R (2014). A comprehensive analysis of Helicobacter pylori plasticity zones reveals that they are integrating conjugative elements with intermediate integration specificity. BMC Genomics. 0.840277778. [PubMed:24767410] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU