ICEberg
I. Information of ICE
ICEberg ID973
Name ICEhptfs4b This is a predicted ICE derived from literature
OrganismHelicobacter pylori G27
Size (bp)39371
GC content [Genome] (%)32.66
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_011333 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1045702..1085072 
Putative oriT region -
Putative relaxase coordinates: 1063336..1065246; Locus tag: HPG27_RS05080;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICEhptfs4b is not available.



The graph information of ICEhptfs4b components from NC_011333
Complete gene list of ICEhptfs4b from NC_011333
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1HPG27_RS049751042313..1043482 [+], 1170class I SAM-dependent methyltransferase
2HPG27_RS049801043492..1045363 [-], 1872mechanosensitive ion channel family protein
3HPG27_RS049851045764..1046528 [+], 765hypothetical protein
4HPG27_RS049951048432..1048734 [+], 303hypothetical proteinVirB2, T4SS component 
5HPG27_RS050001048735..1048995 [+], 261hypothetical proteinVirB3, T4SS component 
6HPG27_RS050101051500..1053434 [+], 1935type IA DNA topoisomerase
7HPG27_RS050151053564..1054550 [+], 987competence proteinVirB8, T4SS component 
8HPG27_RS050201054550..1056091 [+], 1542conjugal transfer proteinVirB9, T4SS component 
9HPG27_RS050251056088..1057323 [+], 1236competence proteinVirB10, T4SS component 
10HPG27_RS050301057393..1057689 [+], 297hypothetical protein
11HPG27_RS050351057679..1057942 [+], 264hypothetical protein
12HPG27_RS050451058237..1059178 [+], 942hypothetical proteinVirB11, T4SS component 
13HPG27_RS050501059175..1059630 [+], 456hypothetical protein
14HPG27_RS050551059627..1059917 [+], 291hypothetical protein
15HPG27_RS050601059918..1060475 [+], 558hypothetical protein
16HPG27_RS050651060731..1062203 [+], 1473type IV secretory system conjugative DNA transfer family proteinT4CP 
17HPG27_RS050701062466..1062747 [-], 282type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
18HPG27_RS050751062740..1063054 [-], 315hypothetical protein
19HPG27_RS050801063336..1065246 [+], 1911hypothetical proteinRelaxase, MOBP Family
20HPG27_RS050851065271..1066443 [-], 1173hypothetical protein
21HPG27_RS050901066475..1066759 [-], 285hypothetical protein
22HPG27_RS050951066842..1067498 [-], 657ParA family protein
23HPG27_RS051001067764..1076190 [-], 8427helicase
24HPG27_RS051051076345..1077382 [+], 1038hypothetical protein
25HPG27_RS051101077383..1078777 [+], 1395hypothetical protein
26HPG27_RS051151078838..1081051 [+], 2214hypothetical protein
27HPG27_RS051201081055..1082440 [+], 1386hypothetical protein
28HPG27_RS051251082440..1083642 [+], 1203hypothetical protein
29HPG27_RS051301083705..1084781 [-], 1077site-specific integraseIntegrase 
30HPG27_RS051601085950..1086699 [-], 750neuraminyllactose-binding hemagglutinin HpaAVF 
31HPG27_RS080551086686..1086826 [-], 141hypothetical protein
32HPG27_RS051651086783..1088309 [-], 1527glutamine-hydrolyzing GMP synthase
33HPG27_RS051701088320..1088808 [-], 489hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins27Fasta
(1) Delahay RM; Croxall NJ; Stephens AD (2018). Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements. Mob DNA. 9:05. [PubMed:29416569] in_silico
(2) Kojima KK; Kobayashi I (2015). Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance. BMC Genomics. 1.234027778. [PubMed:26481899] in_silico
(3) Clewell DB; Weaver KE; Dunny GM; Coque TM; Francia MV; Hayes F; Fischer W; Breithaupt U; Kern B; Smith SI; Spicher C; Haas R (2014). A comprehensive analysis of Helicobacter pylori plasticity zones reveals that they are integrating conjugative elements with intermediate integration specificity. BMC Genomics. 0.840277778. [PubMed:24767410] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU