ICEberg
I. Information of ICE
ICEberg ID972
Name ICEhptfs4a This is a predicted ICE derived from literature
OrganismHelicobacter pylori P12
Size (bp)40747
GC content [Genome] (%)33.82
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_011498 (complete ICE sequence in this genome)
Replicon-
Genome coordinates452023..492769 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEhptfs4a is not available.



The graph information of ICEhptfs4a components from NC_011498
Complete gene list of ICEhptfs4a from NC_011498
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1HPP12_RS02245448002..449183 [-], 1182restriction endonuclease subunit S
2HPP12_RS02250449176..450807 [-], 1632SAM-dependent DNA methyltransferase
3HPP12_RS02255450800..451999 [-], 1200type I restriction endonuclease subunit R
4HPP12_RS02260452423..453496 [+], 1074integraseIntegrase 
5HPP12_RS02265453578..454261 [-], 684hypothetical protein
6HPP12_RS02270454334..455596 [-], 1263P-type conjugative transfer protein TrbL
7HPP12_RS02275455598..455876 [-], 279hypothetical protein
8HPP12_RS02280455928..457328 [-], 1401hypothetical protein
9HPP12_RS02295460810..461832 [-], 1023DUF1738 domain-containing protein
10HPP12_RS02300462135..470522 [+], 8388DEAD/DEAH box helicase
11HPP12_RS02305470785..471441 [+], 657ParA family protein
12HPP12_RS02310471523..471807 [+], 285hypothetical protein
13HPP12_RS02315471839..473017 [+], 1179hypothetical protein
14HPP12_RS02320473042..474955 [-], 1914hypothetical protein
15HPP12_RS02325475253..475567 [+], 315hypothetical protein
16HPP12_RS02330475560..475841 [+], 282type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
17HPP12_RS02335476105..477577 [-], 1473type IV secretory system conjugative DNA transfer family proteinT4CP 
18HPP12_RS02340477879..478391 [-], 513hypothetical protein
19HPP12_RS02345478392..478682 [-], 291hypothetical protein
20HPP12_RS02350478679..479134 [-], 456hypothetical protein
21HPP12_RS02355479131..480072 [-], 942hypothetical proteinVirB11, T4SS component 
22HPP12_RS02360480072..480371 [-], 300hypothetical protein
23HPP12_RS02365480368..480631 [-], 264hypothetical protein
24HPP12_RS02370480624..480917 [-], 294hypothetical protein
25HPP12_RS02375480987..482252 [-], 1266hypothetical proteinVirB10, T4SS component 
26HPP12_RS02380482252..483784 [-], 1533conjugal transfer proteinVirB9, T4SS component 
27HPP12_RS02385483784..484953 [-], 1170hypothetical proteinVirB8, T4SS component 
28HPP12_RS02405489522..489788 [-], 267hypothetical proteinVirB3, T4SS component 
29HPP12_RS02410489789..490091 [-], 303hypothetical proteinVirB2, T4SS component 
30HPP12_RS08340490088..490372 [-], 285hypothetical protein
31HPP12_RS02415490433..491611 [-], 1179hypothetical protein
32HPP12_RS02420491618..491911 [-], 294hypothetical protein
33HPP12_RS02435494743..496638 [-], 1896DUF115 domain-containing protein
34HPP12_RS02440496664..497431 [-], 768hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins29Fasta
(1) Delahay RM; Croxall NJ; Stephens AD (2018). Phylogeographic diversity and mosaicism of the Helicobacter pylori tfs integrative and conjugative elements. Mob DNA. 9:05. [PubMed:29416569] in_silico
(2) Clewell DB; Weaver KE; Dunny GM; Coque TM; Francia MV; Hayes F; Fischer W; Breithaupt U; Kern B; Smith SI; Spicher C; Haas R (2014). A comprehensive analysis of Helicobacter pylori plasticity zones reveals that they are integrating conjugative elements with intermediate integration specificity. BMC Genomics. 0.840277778. [PubMed:24767410] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU