ICEberg
I. Information of ICE
ICEberg ID969
Name ICEEcUMNK88 This is a predicted ICE derived from literature
OrganismEnterotoxigenic Escherichia coli (ETEC) UMNK88
Size (bp)62,701
GC content [Genome] (%)52.71
Insertion sitetRNAAsn
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002729 (complete ICE sequence in this genome)
Replicon-
Genome coordinates4888719..4951420 
Putative oriT region -
Putative relaxase coordinates: 4948614..4950179; Locus tag: UMNK88_5070;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEEcUMNK88 is not available.



The graph information of ICEEcUMNK88 components from CP002729
Complete gene list of ICEEcUMNK88 from CP002729
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1UMNK88_50014885972..4886850 [+], 879chromosome partitioning protein ParA
2UMNK88_50024886844..4887104 [+], 261hypothetical protein
3dnaB4887375..4888742 [+], 1368replicative DNA helicase DnaB
4UMNK88_50044888742..4890454 [+], 1713conserved hypothetical protein
5UMNK88_50054890447..4891172 [+], 726hypothetical protein
6UMNK88_50064891169..4891747 [+], 579conserved hypothetical protein
7UMNK88_50074891744..4891992 [+], 249hypothetical protein
8UMNK88_50084892066..4892341 [+], 276conserved hypothetical protein
9UMNK88_50094892356..4892784 [+], 429conserved hypothetical protein
10UMNK88_50104892888..4894078 [+], 1191conserved hypothetical protein
11UMNK88_50114894086..4894361 [+], 276hypothetical protein
12UMNK88_50124894628..4895374 [+], 747conserved hypothetical protein
13UMNK88_50134895539..4896237 [+], 699conserved hypothetical protein
14topB4896248..4898257 [+], 2010DNA topoisomerase TopB
15UMNK88_50154898888..4899343 [+], 456conserved hypothetical protein
16UMNK88_50164899434..4899637 [+], 204conserved hypothetical protein
17ssb4899653..4900189 [+], 537single-stranded DNA-binding protein
18UMNK88_50194900238..4901158 [+], 921conserved hypothetical protein
19UMNK88_50184901155..4901325 [-], 171hypothetical protein
20UMNK88_50204901350..4901946 [+], 597conserved hypothetical proteinTfc2, T4SS component 
21UMNK88_50214901943..4902716 [+], 774hypothetical protein
22UMNK88_50224902723..4903430 [+], 708conserved hypothetical proteinTfc3, T4SS component 
23UMNK88_50234903409..4904068 [+], 660conserved hypothetical proteinTfc4, T4SS component 
24UMNK88_50244904065..4904589 [+], 525conserved hypothetical proteinTfc5, T4SS component 
25UMNK88_50254904586..4904870 [+], 285conserved hypothetical protein
26UMNK88_50264904867..4905655 [+], 789conserved hypothetical protein
27UMNK88_50274905652..4907748 [+], 2097conserved hypothetical proteinT4CP 
28UMNK88_50284907741..4908493 [+], 753conserved hypothetical proteinTfc8, T4SS component 
29UMNK88_50294908501..4908659 [+], 159hypothetical protein
30UMNK88_50304908832..4909176 [+], 345conserved hypothetical proteinTfc9, T4SS component 
31UMNK88_50314909176..4909418 [+], 243conserved hypothetical protein
32UMNK88_50324909462..4909860 [+], 399conserved hypothetical proteinTfc10, T4SS component 
33UMNK88_50334909872..4910237 [+], 366conserved hypothetical proteinTfc11, T4SS component 
34UMNK88_50344910234..4910896 [+], 663conserved hypothetical proteinTfc12, T4SS component 
35UMNK88_50354910896..4911828 [+], 933conserved hypothetical proteinTfc13, T4SS component 
36UMNK88_50364911818..4913317 [+], 1500conserved hypothetical proteinTfc14, T4SS component 
37UMNK88_50374913329..4913772 [+], 444signal recognition particle GTPaseTfc15, T4SS component 
38UMNK88_50394913980..4916676 [+], 2697conserved hypothetical proteinTfc16, T4SS component 
39UMNK88_50404916681..4917061 [+], 381hypothetical proteinTfc17, T4SS component 
40UMNK88_50414917509..4917712 [+], 204conserved hypothetical protein
41UMNK88_50424918516..4918707 [-], 192hypothetical protein
42UMNK88_50434918996..4919391 [+], 396conserved hypothetical proteinTfc24, T4SS component 
43UMNK88_50444919388..4920362 [+], 975conserved hypothetical proteinTfc23, T4SS component 
44UMNK88_50454920376..4921833 [+], 1458conserved hypothetical proteinTfc22, T4SS component 
45UMNK88_50464921826..4922161 [+], 336conserved hypothetical protein
46UMNK88_50474922164..4923738 [+], 1575conserved hypothetical proteinTfc19, T4SS component 
47UMNK88_50484924292..4924855 [+], 564conserved hypothetical protein
48UMNK88_50494926536..4927438 [+], 903phage DNA-binding protein
49UMNK88_50504927489..4927725 [+], 237conserved hypothetical protein
50UMNK88_50514927728..4928615 [-], 888conserved hypothetical proteinIntegrase 
51UMNK88_50524928615..4928941 [-], 327conserved hypothetical protein
52UMNK88_50534929948..4930340 [+], 393hypothetical protein
53UMNK88_50544930533..4930898 [+], 366hypothetical protein
54UMNK88_50554931004..4931381 [+], 378hypothetical protein
55UMNK88_50564931469..4932098 [+], 630hypothetical protein
56UMNK88_50574932221..4932604 [+], 384conserved hypothetical protein
57UMNK88_50584932697..4933674 [+], 978antirestriction protein
58UMNK88_50594933789..4934736 [+], 948conserved hypothetical protein
59UMNK88_50604934858..4935544 [+], 687conserved hypothetical protein
60UMNK88_50614935750..4936793 [+], 1044hypothetical protein
61UMNK88_50624936790..4938364 [+], 1575conserved hypothetical protein
62UMNK88_50634938424..4939632 [+], 1209conserved hypothetical protein
63UMNK88_50644940332..4941399 [+], 1068conserved hypothetical protein
64UMNK88_50654942012..4942254 [+], 243hypothetical protein
65UMNK88_50664942208..4942486 [+], 279conserved hypothetical protein
66UMNK88_50674942613..4943155 [+], 543hypothetical protein
67UMNK88_50684943734..4946982 [+], 3249conserved hypothetical protein
68UMNK88_50694947107..4948621 [+], 1515conserved hypothetical proteinTraI_F, T4SS component 
69UMNK88_50704948614..4950179 [+], 1566conserved hypothetical proteinRelaxase, MOBH Family
70UMNK88_50714950237..4951229 [+], 993conserved hypothetical protein
71UMNK88_50734951603..4952178 [-], 576conserved hypothetical protein
72UMNK88_50744952215..4953912 [-], 1698thiol:disulfide interchange protein DsbD
73UMNK88_50754953888..4954226 [-], 339conserved hypothetical protein
74UMNK88_50764954342..4955550 [-], 1209anaerobic C4-dicarboxylate transporter protein DcuA
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins67Fasta
(1) Mohammed M; Cormican M (2015). Whole genome sequencing provides possible explanations for the difference in phage susceptibility among two Salmonella Typhimurium phage types (DT8 and DT30) associated with a single foodborne outbreak. BMC Res Notes. 0.838888889. [PubMed:26613761] in_silico
(2) Shepard SM; Danzeisen JL; Isaacson RE; Seemann T; Achtman M; Johnson TJ (2012). Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli. J Bacteriol. 194(2):395-405. [PubMed:22081385] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU