ICEberg
I. Information of ICE
ICEberg ID963
Name ICEAspMex1 This is a predicted ICE derived from literature
OrganismAlteromonas sp. Mex14
Size (bp)86,518
GC content [Genome] (%)46.02
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP018023 (complete ICE sequence in this genome)
Replicon-
Genome coordinates1253680..1337537 
Putative oriT region -
Putative relaxase coordinates: 1274900..1277050; Locus tag: BM527_05475;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEAspMex1 is not available.



The graph information of ICEAspMex1 components from CP018023
Complete gene list of ICEAspMex1 from CP018023
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1BM527_053751248893..1249828 [+], 936alcohol dehydrogenase
2BM527_053801249823..1250173 [-], 351hypothetical protein
3BM527_053851250360..1251391 [-], 10321,4-alpha-glucan branching protein
4BM527_053901251400..1252473 [-], 1074hemolysin D
5BM527_053951252473..1252925 [-], 453transcriptional regulator
6BM527_054001253979..1254173 [+], 195DNA-binding protein
7BM527_054051254190..1255431 [-], 1242integraseIntegrase 
8BM527_054101255433..1255702 [-], 270hypothetical protein
9BM527_054151255705..1256679 [-], 975plasmid stability protein StbA
10BM527_054201257144..1257587 [+], 444hypothetical protein
11BM527_054251257598..1258866 [-], 1269DNA polymerase V subunit UmuC
12BM527_054301258874..1259323 [-], 450UV protection and mutation protein
13BM527_054351259963..1260868 [+], 906DNA polymerase III subunit epsilon
14BM527_054401260956..1261255 [+], 300hypothetical protein
15BM527_054451261573..1262526 [+], 954WYL domain-containing protein
16BM527_054501262607..1264433 [+], 1827site-specific DNA-methyltransferase
17BM527_054551264435..1267086 [+], 2652restriction endonuclease subunit R
18BM527_054601267183..1271064 [+], 3882hypothetical protein
19BM527_054651271064..1273490 [+], 2427hypothetical protein
20BM527_054701273562..1274743 [+], 1182hypothetical protein
21BM527_054751274900..1277050 [+], 2151phosphohydrolaseRelaxase, MOBH Family
22BM527_054801277099..1278919 [+], 1821conjugal transfer proteinTraD_F, T4SS component 
23BM527_054851278929..1279489 [+], 561conjugative transfer protein
24BM527_054901279476..1280111 [+], 636conjugal transfer protein
25BM527_054951280138..1280725 [-], 588plasmid-related protein
26BM527_055001281014..1281295 [+], 282type IV conjugative transfer system protein TraLTraL_F, T4SS component 
27BM527_055051281292..1281918 [+], 627pilus assembly proteinTraE_F, T4SS component 
28BM527_055101281902..1282798 [+], 897hypothetical proteinTraK_F, T4SS component 
29BM527_055151282801..1284090 [+], 1290conjugal transfer protein TraBTraB_F, T4SS component 
30BM527_055201284087..1284737 [+], 651conjugal transfer protein TraVTraV_F, T4SS component 
31BM527_055251284734..1285120 [+], 387hypothetical proteinTraA_F, T4SS component 
32BM527_055301285341..1286120 [+], 780hypothetical protein
33BM527_055351286125..1287063 [+], 939hypothetical protein
34BM527_055401287642..1290371 [+], 2730heavy metal resistance protein CzcA
35BM527_055451290368..1291477 [+], 1110hypothetical protein
36BM527_055501291490..1293022 [+], 1533hypothetical protein
37BM527_055551293025..1294470 [+], 1446AAA family ATPase
38BM527_055601294615..1295307 [+], 693disulfide isomeraseTrbB_I, T4SS component 
39BM527_055651295307..1297706 [+], 2400type-IV secretion system protein TraCTraC_F, T4SS component 
40BM527_055701297699..1298046 [+], 348plasmid-related protein
41BM527_055751298123..1298542 [+], 420S26 family signal peptidaseTraF, T4SS component 
42BM527_055801298553..1299677 [+], 1125pilus assembly proteinTraW_F, T4SS component 
43BM527_055851299661..1300689 [+], 1029conjugal transfer protein TraUTraU_F, T4SS component 
44BM527_055901300692..1304384 [+], 3693conjugal transfer protein TraNTraN_F, T4SS component 
45BM527_055951304507..1305034 [-], 528hypothetical protein
46BM527_056001305044..1305817 [-], 774hypothetical protein
47BM527_056051306290..1307219 [+], 930DNA processing protein DprA
48BM527_056101307216..1311892 [+], 4677haloacid dehalogenase
49BM527_056151311889..1312377 [+], 489hypothetical protein
50BM527_056201312656..1313333 [-], 678deoxyribonuclease I
51BM527_056251313442..1314044 [-], 603hypothetical protein
52BM527_056301314412..1314738 [+], 327plasmid-related protein
53BM527_056351314754..1315173 [+], 420single-stranded DNA-binding protein
54BM527_056401315253..1316071 [+], 819phage recombination protein Bet
55BM527_056451316357..1317373 [+], 1017endonuclease
56BM527_056501317583..1318542 [+], 960CbbQ/NirQ/NorQ/GpvN family protein
57BM527_056551318542..1319309 [+], 768hypothetical protein
58BM527_056601319408..1320361 [+], 954cobalamin biosynthesis protein
59BM527_056651320423..1320863 [+], 441hypothetical protein
60BM527_056701320933..1322588 [+], 1656hypothetical protein
61BM527_056751322670..1323167 [+], 498DNA repair protein RadC
62BM527_056801323167..1323508 [+], 342plasmid-related protein
63BM527_056851323599..1324666 [+], 1068DNA primase
64BM527_056901324756..1325463 [+], 708hypothetical protein
65BM527_056951325826..1326890 [+], 1065hypothetical protein
66BM527_057001327094..1328038 [+], 945thioredoxin family proteinTraF_F, T4SS component 
67BM527_057051328041..1329429 [+], 1389conjugal transfer protein TraHTraH_F, T4SS component 
68BM527_057101329433..1333002 [+], 3570conjugal transfer protein TraGTraG_F, T4SS component 
69BM527_057151333033..1333464 [-], 432hypothetical protein
70BM527_057201333522..1334055 [-], 534transcriptional regulator
71BM527_057251334052..1334351 [-], 300transcriptional regulator
72BM527_057301334348..1334896 [-], 549transglycosylaseOrf169_F, T4SS component 
73BM527_057351334883..1335545 [-], 663hypothetical protein
74BM527_057401335532..1336401 [-], 870hypothetical protein
75BM527_057451336457..1336708 [-], 252Cro/Cl family transcriptional regulator
76BM527_057501336826..1337473 [+], 648transcriptional regulator
77BM527_057551337730..1339319 [+], 1590peptide chain release factor 3
78BM527_057601339333..1341063 [+], 1731arginine--tRNA ligase
79BM527_057651341268..1341834 [+], 567FMN reductase
80BM527_057701342323..1342526 [+], 204hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins71Fasta
(1) Lopez-Perez M; Ramon-Marco N; Rodriguez-Valera F (2017). Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 18(1):36. [PubMed:28056800] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU