ICEberg
I. Information of ICE
ICEberg ID960
Name ICEApl1 This ICE is derived from experimental literature
ICEO ID ICEO_0000114
OrganismActinobacillus pleuropneumoniae serovar 8
Size (bp)56150
GC content [Genome] (%)-
Insertion sitetRNA-Leu (TAA)
FunctionAntibiotic resistance genes: tet(B)
Species that ICE can be transferred toActinobacillus pleuropneumoniae
Nucleotide SequenceKU551309 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates27..56176 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEApl1 is not available.



The graph information of ICEApl1 components from KU551309
Complete gene list of ICEApl1 from KU551309
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1parA168..1004 [+], 837putative chromosome partitioning related protein
2dnaB21006..2361 [+], 1356replicative DNA helicase
3ICEApl1.032354..4042 [+], 1689hypothetical protein
4ICEApl1.044042..4593 [+], 552hypothetical protein
5ICEApl1.054743..5966 [+], 1224hypothetical protein
6ICEApl1.066191..6946 [+], 756hypothetical protein
7ICEApl1.076961..7434 [+], 474hypothetical protein
8ssb7681..8103 [+], 423single-stranded DNA binding protein
9ICEApl1.098130..8648 [+], 519hypothetical protein
10ICEApl1.108864..9421 [-], 558hypothetical protein
11topB29512..11557 [+], 2046DNA topoisomerase III
12ICEApl1.1212442..12870 [+], 429hypothetical protein
13ICEApl1.1312985..13626 [+], 642hypothetical protein
14radC13765..14235 [+], 471DNA repair protein
15ICEApl1.1514328..14687 [+], 360hypothetical protein
16ICEApl1.1714747..15955 [+], 1209DDE domain protein
17ICEApl1.1815965..16090 [-], 126DNA-binding transcriptional regulator LysR
18gltS16321..17526 [-], 1206sodium/glutamate symporter
19ICEApl1.2017970..18290 [+], 321antibiotic biosynthesis monooxygenase
20ICEApl1.2118283..18669 [+], 387hypothetical protein
21ICEApl1.2218740..19363 [+], 624helix-turn-helix domain protein
22ICEApl1.2319583..19963 [-], 381putative HTH-type transcriptional regulator
23tetB20045..21250 [+], 1206TetB protein
24tetC21363..21956 [-], 594TetC protein
25tetD22044..22460 [+], 417putative HTH-type transcriptional regulator
26ICEApl1.2722470..23678 [-], 1209DDE domain protein
27ICEApl1.2923876..24079 [+], 204hypothetical protein
28ICEApl1.3024170..24901 [+], 732TraX protein
29ICEApl1.3125000..25629 [+], 630hypothetical protein
30ICEApl1.3225633..26373 [+], 741hypothetical protein
31ICEApl1.3326352..27110 [+], 759hypothetical protein
32ICEApl1.3427126..27632 [+], 507hypothetical protein
33ICEApl1.3527629..29878 [+], 2250hypothetical protein
34ICEApl1.3629862..30197 [+], 336hypothetical protein
35ICEApl1.3730197..30883 [+], 687hypothetical protein
36ICEApl1.3831044..31364 [+], 321hypothetical protein
37ICEApl1.3931368..31613 [+], 246hypothetical protein
38ICEApl1.4031633..32034 [+], 402hypothetical protein
39ICEApl1.4132054..32425 [+], 372hypothetical protein
40ICEApl1.4232437..33081 [+], 645hypothetical protein
41ICEApl1.4333081..33950 [+], 870hypothetical protein
42ICEApl1.4433961..35361 [+], 1401hypothetical protein
43ICEApl1.4535371..35778 [+], 408hypothetical protein
44ICEApl1.4635794..38664 [+], 2871F pilus assembly Type-IV secretion system for plasmid transfer
45ICEApl1.4738636..39079 [+], 444hypothetical protein
46ICEApl1.4839089..39412 [+], 324hypothetical protein
47ICEApl1.4939421..40917 [+], 1497hypothetical protein
48ICEApl1.5040944..41300 [-], 357hypothetical protein
49ICEApl1.5141497..41676 [+], 180hypothetical protein
50ICEApl1.5241721..42128 [-], 408hypothetical protein
51ICEApl1.5342144..44144 [-], 2001hypothetical protein
52ICEApl1.5444159..45100 [-], 942TraU protein
53ICEApl1.5545097..45534 [-], 438hypothetical protein
54ICEApl1.5645915..46271 [+], 357hypothetical protein
55ICEApl1.5746356..46589 [+], 234hypothetical protein
56ICEApl1.5846592..46840 [+], 249hypothetical protein
57ICEApl1.5946844..47002 [+], 159hypothetical protein
58traC47133..48086 [+], 954DNA primase TraC
59ICEApl1.6148190..48951 [+], 762N-6 DNA methylase
60ICEApl1.6249028..49471 [-], 444hypothetical protein
61tnpR49554..50144 [-], 591gamma-delta resolvase
62ICEApl1.6450159..50350 [-], 192hypothetical protein
63ICEApl1.6550597..50884 [+], 288hypothetical protein
64ICEApl1.6651051..51212 [+], 162hypothetical protein
65ICEApl1.6751191..51871 [+], 681hypothetical protein
66ICEApl1.6852187..52891 [-], 705hypothetical protein
67ICEApl1.6953129..55015 [+], 1887Putative helicase
68ICEApl1.7055008..55919 [+], 912putative site-specific recombinase
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins68Fasta
(1) Bosse JT; Li Y; Rogers J; Fernandez Crespo R; Li Y; Chaudhuri RR; Holden MT; Maskell DJ; Tucker AW; Wren BW; Rycroft AN; Langford PR (2017). Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae. Front Microbiol. 0.549305556. [PubMed:28321207] experimental in_silico
(2) Bosse JT; Li Y; Fernandez Crespo R; Chaudhuri RR; Rogers J; Holden MT; Maskell DJ; Tucker AW; Wren BW; Rycroft AN; Langford PR (2016). ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae. Front Microbiol. 0.854166667. [PubMed:27379024] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU