ICEberg
I. Information of ICE
ICEberg ID959
Name ICEAmeAeS1 This is a predicted ICE derived from literature
OrganismAlteromonas mediterranea MED64
Size (bp)-
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_023045 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 1220251..1222401; Locus tag: I533_RS05465;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEAmeAeS1 is not available.



The graph information of ICEAmeAeS1 components from NC_023045
Incomplete gene list of ICEAmeAeS1 from NC_023045
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1I533_RS053501196069..1196338 [-], 270hypothetical protein
2I533_RS053551196341..1197315 [-], 975plasmid stability protein StbA
3I533_RS053601197780..1198223 [+], 444hypothetical protein
4I533_RS053651198234..1199406 [-], 1173translesion error-prone DNA polymerase V subunit UmuC
5I533_RS053751200352..1203330 [-], 2979Tn3 family transposase
6I533_RS053801203490..1203681 [+], 192hypothetical protein
7I533_RS053851203702..1204265 [-], 564hypothetical protein
8I533_RS053901204418..1204687 [-], 270hypothetical protein
9I533_RS053951204695..1205144 [-], 450translesion error-prone DNA polymerase V autoproteolytic subunit
10I533_RS054001205143..1205400 [+], 258hypothetical protein
11I533_RS054051205783..1206688 [+], 906DNA polymerase III subunit epsilon
12I533_RS054101206776..1207075 [+], 300hypothetical protein
13I533_RS054151207397..1208347 [+], 951WYL domain-containing protein
14I533_RS054201208356..1210071 [+], 1716DNA methyltransferase
15I533_RS054251210064..1210768 [+], 705type I restriction endonuclease subunit S
16I533_RS054301210765..1211919 [+], 1155BstXI family restriction endonuclease
17I533_RS054351211924..1215088 [+], 3165type I restriction endonuclease subunit R
18I533_RS054401215104..1217302 [+], 2199AAA family ATPase
19I533_RS054451217302..1218429 [+], 11285-methylcytosine-specific restriction endonuclease system specificity protein McrC
20I533_RS054501218429..1219283 [+], 855restriction endonuclease
21I533_RS054551219377..1219658 [+], 282hypothetical protein
22I533_RS054601219658..1220131 [+], 474hypothetical protein
23I533_RS054651220251..1222401 [+], 2151phosphohydrolaseRelaxase, MOBH Family
24I533_RS054701222450..1224270 [+], 1821hypothetical proteinTraD_F, T4SS component 
25I533_RS054751224280..1224840 [+], 561hypothetical protein
26I533_RS054801224827..1225462 [+], 636DUF4400 domain-containing protein
27I533_RS054851225734..1227290 [+], 1557IS21 family transposaseIntegrase 
28I533_RS054901227450..1227698 [+], 249hypothetical protein
29I533_RS054951227658..1228929 [+], 1272transposase
30I533_RS055001229005..1229700 [+], 696AAA family ATPase
31I533_RS055051229779..1230351 [-], 573hypothetical protein
32traL1230640..1230921 [+], 282type IV conjugative transfer system protein TraLTraL_F, T4SS component 
33I533_RS055151230918..1231544 [+], 627hypothetical proteinTraE_F, T4SS component 
34I533_RS055201231528..1232424 [+], 897hypothetical proteinTraK_F, T4SS component 
35I533_RS055251232427..1233716 [+], 1290hypothetical proteinTraB_F, T4SS component 
36I533_RS055301233713..1234363 [+], 651conjugal transfer protein TraVTraV_F, T4SS component 
37I533_RS055351234360..1234746 [+], 387hypothetical proteinTraA_F, T4SS component 
38I533_RS055401234966..1235757 [+], 792hypothetical protein
39I533_RS055451235750..1236439 [+], 690nucleotidyl transferase AbiEii/AbiGii toxin family protein
40I533_RS195101236447..1236686 [+], 240hypothetical protein
41I533_RS055501236818..1237510 [+], 693DsbC family proteinTrbB_I, T4SS component 
42traC1237510..1239909 [+], 2400type IV secretion system protein TraCTraC_F, T4SS component 
43I533_RS055601239902..1240249 [+], 348hypothetical protein
44I533_RS055651240326..1240745 [+], 420peptidaseTraF, T4SS component 
45I533_RS055701240756..1241880 [+], 1125hypothetical proteinTraW_F, T4SS component 
46I533_RS055751241864..1242892 [+], 1029hypothetical proteinTraU_F, T4SS component 
47I533_RS055801242895..1246587 [+], 3693conjugal transfer protein TraNTraN_F, T4SS component 
48I533_RS055851246819..1247151 [+], 333hypothetical protein
49I533_RS055901247182..1247844 [+], 663hypothetical protein
50I533_RS055951247935..1248537 [-], 603hypothetical protein
51I533_RS056001248905..1249231 [+], 327hypothetical protein
52I533_RS056051249247..1249666 [+], 420single-stranded DNA-binding protein
53bet1249746..1250564 [+], 819phage recombination protein Bet
54I533_RS056151250851..1251867 [+], 1017endonuclease-like phage-like protein
55I533_RS056201252077..1253036 [+], 960CbbQ/NirQ/NorQ/GpvN family protein
56I533_RS056251253036..1253803 [+], 768hypothetical protein
57I533_RS056301253902..1254855 [+], 954DUF3150 domain-containing protein
58I533_RS056351254917..1255357 [+], 441hypothetical protein
59I533_RS056401255427..1257082 [+], 1656VWA domain-containing protein
60I533_RS056451257166..1257663 [+], 498DNA repair protein RadC
61I533_RS056501257663..1258004 [+], 342hypothetical protein
62I533_RS056551258095..1259162 [+], 1068phage P4 alpha, zinc-binding domain-containing protein
63I533_RS056601259253..1259960 [+], 708hypothetical protein
64I533_RS056651260063..1262060 [-], 1998hypothetical protein
65I533_RS056701262051..1262542 [-], 492hypothetical protein
66I533_RS056751262565..1263800 [-], 1236hypothetical protein
67I533_RS056801264068..1265012 [+], 945thioredoxin family proteinTraF_F, T4SS component 
68I533_RS056851265015..1266403 [+], 1389TraH family proteinTraH_F, T4SS component 
69I533_RS056901266407..1269976 [+], 3570conjugal transfer protein TraGTraG_F, T4SS component 
70I533_RS056951270009..1270440 [-], 432hypothetical protein
71I533_RS057001270498..1271031 [-], 534hypothetical protein
72I533_RS057051271028..1271327 [-], 300hypothetical protein
73I533_RS057101271324..1271872 [-], 549lytic transglycosylase domain-containing proteinOrf169_F, T4SS component 
74I533_RS057151271859..1272521 [-], 663hypothetical protein
75I533_RS057201272508..1273377 [-], 870hypothetical protein
76I533_RS057251273433..1273684 [-], 252hypothetical protein
77I533_RS057301273802..1274449 [+], 648transcriptional regulator
78prfC1274706..1276295 [+], 1590peptide chain release factor 3
79I533_RS057401276309..1278039 [+], 1731arginine--tRNA ligase
80I533_RS057451278232..1278798 [+], 567NADPH-dependent oxidoreductase
81I533_RS057501279011..1279214 [+], 204hypothetical protein
82I533_RS057551279322..1280578 [-], 1257DUF2891 domain-containing protein
83I533_RS057601280638..1281681 [-], 1044PLP-dependent cysteine synthase family protein
84I533_RS057701282435..1283379 [+], 945thioredoxin family proteinTraF_F, T4SS component 
85I533_RS057751283382..1284770 [+], 1389TraH family proteinTraH_F, T4SS component 
86I533_RS057801284774..1288343 [+], 3570conjugal transfer protein TraGTraG_F, T4SS component 
87I533_RS057851288376..1288807 [-], 432hypothetical protein
88I533_RS057901288865..1289398 [-], 534hypothetical protein
89I533_RS057951289395..1289694 [-], 300hypothetical protein
90I533_RS058001289691..1290239 [-], 549lytic transglycosylase domain-containing protein
91I533_RS058051290226..1290888 [-], 663hypothetical protein
92I533_RS058101290875..1291744 [-], 870hypothetical protein
93I533_RS058151291800..1292051 [-], 252hypothetical protein
94I533_RS058201292169..1292816 [+], 648transcriptional regulator
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins83Fasta
(1) Lopez-Perez M; Ramon-Marco N; Rodriguez-Valera F (2017). Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 18(1):36. [PubMed:28056800] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU