ICEberg
I. Information of ICE
ICEberg ID958
Name ICEAmaAS2 This is a predicted ICE derived from literature
OrganismAlteromonas mediterranea UM4b
Size (bp)104,983
GC content [Genome] (%)48.1[44.9]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_021714 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 1292578..1294728; Locus tag: I636_RS05790;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEAmaAS2 is not available.



The graph information of ICEAmaAS2 components from NC_021714
Incomplete gene list of ICEAmaAS2 from NC_021714
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1I636_RS056551263705..1264778 [-], 1074HlyD family secretion protein
2I636_RS056601264775..1265230 [-], 456MarR family transcriptional regulator
3I636_RS056651265929..1266117 [-], 189hypothetical protein
4I636_RS056701266468..1266788 [+], 321XRE family transcriptional regulator
5I636_RS056751266781..1268010 [+], 1230type II toxin-antitoxin system HipA family toxin
6I636_RS056801268227..1268421 [+], 195DNA-binding protein
7I636_RS056851268433..1269674 [-], 1242DUF4102 domain-containing proteinIntegrase 
8I636_RS056901269676..1269945 [-], 270hypothetical protein
9I636_RS056951269948..1270922 [-], 975rod shape determination protein
10I636_RS057001271387..1271833 [+], 447hypothetical protein
11I636_RS057051272198..1273166 [+], 969calcium:sodium antiporter
12I636_RS057101273235..1274068 [+], 834mechanosensitive ion channel family protein
13I636_RS057151274077..1275345 [-], 1269translesion error-prone DNA polymerase V subunit UmuC
14I636_RS057201275353..1275802 [-], 450translesion error-prone DNA polymerase V autoproteolytic subunit
15I636_RS057251276442..1277347 [+], 906DNA polymerase III subunit epsilon
16I636_RS057301277561..1277860 [+], 300hypothetical protein
17I636_RS057351278178..1279146 [+], 969WYL domain-containing protein
18I636_RS057401279260..1281689 [+], 2430SAM-dependent DNA methyltransferase
19I636_RS057451281689..1282957 [+], 1269restriction endonuclease subunit S
20I636_RS057501282967..1284130 [+], 1164DUF4268 domain-containing protein
21I636_RS057551284145..1287045 [+], 2901type I restriction endonuclease subunit R
22I636_RS057601287068..1288153 [+], 1086ATP-binding region, ATPase-like protein
23I636_RS057651288176..1288727 [+], 552MarR family transcriptional regulator
24I636_RS057701289032..1289400 [+], 369metal-dependent hydrolase
25I636_RS057751289410..1290564 [+], 1155SAVED domain-containing protein
26I636_RS057801290557..1291747 [+], 1191nucleotidyltransferase
27I636_RS057851291748..1292461 [+], 714hypothetical protein
28I636_RS057901292578..1294728 [+], 2151metal-dependent phosphohydrolaseRelaxase, MOBH Family
29I636_RS057951294777..1296600 [+], 1824hypothetical proteinTraD_F, T4SS component 
30I636_RS058001296610..1297170 [+], 561hypothetical protein
31I636_RS058051297157..1297792 [+], 636DUF4400 domain-containing protein
32I636_RS058101297819..1298406 [-], 588hypothetical protein
33cadR1298568..1298975 [-], 408Cd(II)/Pb(II)-responsive transcriptional regulator
34I636_RS058201299071..1299967 [+], 897cation transporter
35I636_RS058251300133..1301296 [+], 1164hypothetical protein
36I636_RS058351301756..1302082 [+], 327sel1 repeat family protein
37I636_RS058401302136..1302468 [-], 333hypothetical protein
38I636_RS058451302677..1302889 [-], 213hypothetical protein
39traL1302925..1303206 [+], 282type IV conjugative transfer system protein TraLTraL_F, T4SS component 
40I636_RS058551303203..1303829 [+], 627hypothetical proteinTraE_F, T4SS component 
41I636_RS058601303813..1304709 [+], 897conjugal transfer protein TraKTraK_F, T4SS component 
42I636_RS058651304712..1306001 [+], 1290IncF plasmid conjugative transfer pilus assembly protein TraBTraB_F, T4SS component 
43I636_RS058701305998..1306648 [+], 651conjugal transfer protein TraVTraV_F, T4SS component 
44I636_RS058751306645..1307034 [+], 390hypothetical proteinTraA_F, T4SS component 
45I636_RS058801307443..1309938 [+], 2496copper-translocating P-type ATPase
46cueR1309964..1310428 [+], 465Cu(I)-responsive transcriptional regulator
47I636_RS058951311214..1311405 [+], 192hypothetical protein
48cueR1312013..1312438 [+], 426Cu(I)-responsive transcriptional regulator
49I636_RS059051313201..1313554 [+], 354ArsR family transcriptional regulator
50I636_RS059151314913..1315941 [+], 1029cation transporter
51I636_RS059201315986..1316264 [+], 279transcriptional regulator
52I636_RS059251316861..1319515 [+], 2655cadmium-translocating P-type ATPase
53I636_RS059351321184..1324375 [+], 3192multidrug efflux RND transporter permease subunit
54I636_RS059401324377..1325870 [+], 1494multidrug transporter
55I636_RS059451326343..1326693 [+], 351AcrB/AcrD/AcrF family protein
56I636_RS198301326684..1326800 [+], 117AcrB/AcrD/AcrF family protein
57I636_RS059501326846..1327067 [+], 222hydrophobe/amphiphile efflux protein
58I636_RS196851327165..1327356 [+], 192copper chaperone
59I636_RS196901328057..1328329 [+], 273IS66 family insertion sequence hypothetical protein
60I636_RS059601328326..1328580 [+], 255IS66 family insertion sequence hypothetical protein
61I636_RS059651328791..1329483 [+], 693DsbC family proteinTrbB_I, T4SS component 
62traC1329483..1331882 [+], 2400type IV secretion system protein TraCTraC_F, T4SS component 
63I636_RS059751331875..1332222 [+], 348hypothetical protein
64I636_RS059801332299..1332718 [+], 420conjugal transfer pilin signal peptidase TrbITraF, T4SS component 
65I636_RS059851332729..1333853 [+], 1125plasmid pilus assembly proteinTraW_F, T4SS component 
66I636_RS059901333837..1334865 [+], 1029TraU family proteinTraU_F, T4SS component 
67I636_RS059951334868..1338560 [+], 3693mating pair stabilization TraNTraN_F, T4SS component 
68I636_RS060001338702..1340378 [-], 1677ATP-dependent helicase
69I636_RS060051340375..1342300 [-], 1926ATP-dependent endonuclease
70I636_RS060101342378..1344756 [-], 2379peptidase S8
71I636_RS060151344771..1345742 [-], 972ATP-binding protein
72I636_RS060201345745..1345942 [-], 198hypothetical protein
73I636_RS060251346084..1346686 [-], 603hypothetical protein
74I636_RS060301347054..1347380 [+], 327hypothetical protein
75I636_RS060351347396..1347815 [+], 420single-stranded DNA-binding protein
76bet1347895..1348713 [+], 819phage recombination protein Bet
77I636_RS060451349000..1350016 [+], 1017DNA recombination protein
78I636_RS060501350226..1351185 [+], 960AAA family ATPase
79I636_RS060551351185..1351952 [+], 768hypothetical protein
80I636_RS060601352051..1353004 [+], 954DUF3150 domain-containing protein
81I636_RS060651353066..1353506 [+], 441hypothetical protein
82I636_RS060701353576..1355231 [+], 1656VWA domain-containing protein
83I636_RS060751355317..1355814 [+], 498DNA repair protein RadC
84I636_RS060801355814..1356155 [+], 342hypothetical protein
85I636_RS060851356247..1357314 [+], 1068phage P4 alpha, zinc-binding domain-containing protein
86I636_RS060901357404..1358111 [+], 708hypothetical protein
87I636_RS060951358354..1359271 [-], 918LysR family transcriptional regulator
88I636_RS061001359384..1360523 [+], 1140chromate resistance protein
89I636_RS061051360895..1361839 [+], 945thioredoxin family proteinTraF_F, T4SS component 
90I636_RS061101361842..1363230 [+], 1389TraH family proteinTraH_F, T4SS component 
91I636_RS061151363234..1366803 [+], 3570conjugal transfer protein TraGTraG_F, T4SS component 
92I636_RS061201366836..1367267 [-], 432hypothetical protein
93I636_RS061251367325..1367858 [-], 534transcriptional activator
94I636_RS061301367855..1368154 [-], 300transcriptional activator
95I636_RS061351368151..1368699 [-], 549lytic transglycosylase domain-containing proteinOrf169_F, T4SS component 
96I636_RS061401368686..1369348 [-], 663hypothetical protein
97I636_RS061451369335..1370204 [-], 870hypothetical protein
98I636_RS061501370260..1370511 [-], 252hypothetical protein
99I636_RS061551370629..1371276 [+], 648LexA family transcriptional regulator
100prfC1371533..1373122 [+], 1590peptide chain release factor 3
101I636_RS061651373136..1374866 [+], 1731arginine--tRNA ligase
102I636_RS061701375059..1375625 [+], 567NADPH-dependent oxidoreductase
103I636_RS061751375838..1376041 [+], 204hypothetical protein
104I636_RS061801376149..1377405 [-], 1257DUF2891 domain-containing protein
105I636_RS061851377465..1378508 [-], 1044PLP-dependent cysteine synthase family protein
106I636_RS061901378835..1380049 [+], 1215endonuclease/exonuclease/phosphatase family protein
107I636_RS061951380167..1383010 [+], 2844GGDEF domain-containing protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins100Fasta
(1) Lopez-Perez M; Ramon-Marco N; Rodriguez-Valera F (2017). Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 18(1):36. [PubMed:28056800] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU