ICEberg
I. Information of ICE
ICEberg ID957
Name ICEAmaAS1 This is a predicted ICE derived from literature
OrganismAlteromonas mediterranea DE1-UM7-UM8-U10
Size (bp)103,910
GC content [Genome] (%)47.9[44.9]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_019393 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 1301476..1303626; Locus tag: AMAD1_RS05815;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEAmaAS1 is not available.



The graph information of ICEAmaAS1 components from NC_019393
Incomplete gene list of ICEAmaAS1 from NC_019393
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1AMAD1_RS056551267527..1268726 [+], 1200MFS transporter
2AMAD1_RS056601268737..1269645 [+], 909TIGR03571 family LLM class oxidoreductase
3AMAD1_RS056651269667..1270503 [+], 8372,5-didehydrogluconate reductase DkgB
4AMAD1_RS056701270534..1271469 [+], 936zinc-containing alcohol dehydrogenase
5AMAD1_RS056751271598..1272629 [-], 1032DUF2955 domain-containing protein
6AMAD1_RS218204643791..81 [-], -464370950S ribosomal protein L34
7AMAD1_RS056801272638..1273609 [-], 972HlyD family secretion protein
8AMAD1_RS056851273673..1274128 [-], 456MarR family transcriptional regulator
9AMAD1_RS056901274827..1275015 [-], 189hypothetical protein
10AMAD1_RS056951275366..1275686 [+], 321XRE family transcriptional regulator
11AMAD1_RS057001275679..1276908 [+], 1230type II toxin-antitoxin system HipA family toxin
12AMAD1_RS057051277125..1277319 [+], 195DNA-binding protein
13AMAD1_RS057101277331..1278572 [-], 1242DUF4102 domain-containing proteinIntegrase 
14AMAD1_RS057151278574..1278843 [-], 270hypothetical protein
15AMAD1_RS057201278846..1279820 [-], 975rod shape determination protein
16AMAD1_RS057251280285..1280731 [+], 447hypothetical protein
17AMAD1_RS057301281096..1282064 [+], 969calcium:sodium antiporter
18AMAD1_RS057351282133..1282966 [+], 834mechanosensitive ion channel family protein
19AMAD1_RS057401282975..1284243 [-], 1269translesion error-prone DNA polymerase V subunit UmuC
20AMAD1_RS057451284251..1284700 [-], 450translesion error-prone DNA polymerase V autoproteolytic subunit
21AMAD1_RS057501285340..1286245 [+], 906DNA polymerase III subunit epsilon
22AMAD1_RS057551286459..1286758 [+], 300hypothetical protein
23AMAD1_RS057601287076..1288044 [+], 969WYL domain-containing protein
24AMAD1_RS057651288158..1290587 [+], 2430SAM-dependent DNA methyltransferase
25AMAD1_RS057701290587..1291855 [+], 1269restriction endonuclease subunit S
26AMAD1_RS057751291865..1293028 [+], 1164DUF4268 domain-containing protein
27AMAD1_RS057801293043..1295943 [+], 2901type I restriction endonuclease subunit R
28AMAD1_RS057851295966..1297051 [+], 1086ATP-binding region, ATPase-like protein
29AMAD1_RS057901297074..1297625 [+], 552MarR family transcriptional regulator
30AMAD1_RS057951297930..1298298 [+], 369metal-dependent hydrolase
31AMAD1_RS058001298308..1299462 [+], 1155SAVED domain-containing protein
32AMAD1_RS058051299455..1300645 [+], 1191nucleotidyltransferase
33AMAD1_RS058101300646..1301359 [+], 714hypothetical protein
34AMAD1_RS058151301476..1303626 [+], 2151metal-dependent phosphohydrolaseRelaxase, MOBH Family
35AMAD1_RS058201303675..1305498 [+], 1824hypothetical proteinTraD_F, T4SS component 
36AMAD1_RS058251305508..1306068 [+], 561hypothetical protein
37AMAD1_RS058301306055..1306690 [+], 636DUF4400 domain-containing protein
38AMAD1_RS058351306717..1307304 [-], 588hypothetical protein
39AMAD1_RS058401307318..1307557 [-], 240hypothetical protein
40traL1307593..1307874 [+], 282type IV conjugative transfer system protein TraLTraL_F, T4SS component 
41AMAD1_RS058551308482..1309378 [+], 897conjugal transfer protein TraKTraK_F, T4SS component 
42AMAD1_RS058601309381..1310670 [+], 1290conjugal transfer protein TraBTraB_F, T4SS component 
43AMAD1_RS058651310667..1311317 [+], 651conjugal transfer protein TraVTraV_F, T4SS component 
44AMAD1_RS058701311314..1311703 [+], 390hypothetical proteinTraA_F, T4SS component 
45AMAD1_RS058751312112..1314607 [+], 2496copper-translocating P-type ATPase
46cueR1314633..1315097 [+], 465Cu(I)-responsive transcriptional regulator
47AMAD1_RS058901315883..1316074 [+], 192hypothetical protein
48cueR1316682..1317107 [+], 426Cu(I)-responsive transcriptional regulator
49AMAD1_RS059001317870..1318223 [+], 354ArsR family transcriptional regulator
50AMAD1_RS059101319588..1320616 [+], 1029cation transporter
51AMAD1_RS059151320661..1320939 [+], 279transcriptional regulator
52AMAD1_RS059201321536..1324190 [+], 2655cadmium-translocating P-type ATPase
53AMAD1_RS059301325860..1329051 [+], 3192multidrug efflux RND transporter permease subunit
54AMAD1_RS059351329053..1330546 [+], 1494multidrug transporter
55AMAD1_RS059401330836..1331015 [+], 180hydrophobe/amphiphile efflux-1 (HAE1) family protein
56AMAD1_RS059451331019..1331369 [+], 351AcrB/AcrD/AcrF family protein
57AMAD1_RS222801331360..1331476 [+], 117AcrB/AcrD/AcrF family protein
58AMAD1_RS059501331522..1331743 [+], 222hydrophobe/amphiphile efflux protein
59AMAD1_RS220801331841..1332032 [+], 192copper chaperone
60AMAD1_RS220851332733..1333005 [+], 273IS66 family insertion sequence hypothetical protein
61AMAD1_RS059601333002..1333256 [+], 255IS66 family insertion sequence hypothetical protein
62AMAD1_RS059651333467..1334159 [+], 693DsbC family proteinTrbB_I, T4SS component 
63traC1334159..1336558 [+], 2400type IV secretion system protein TraCTraC_F, T4SS component 
64AMAD1_RS059751336551..1336898 [+], 348hypothetical protein
65AMAD1_RS059801336975..1337394 [+], 420conjugal transfer pilin signal peptidase TrbITraF, T4SS component 
66AMAD1_RS059851337405..1338529 [+], 1125plasmid pilus assembly proteinTraW_F, T4SS component 
67AMAD1_RS059901338513..1339541 [+], 1029TraU family proteinTraU_F, T4SS component 
68AMAD1_RS059951339544..1343236 [+], 3693mating pair stabilization TraNTraN_F, T4SS component 
69AMAD1_RS060001343378..1345054 [-], 1677ATP-dependent helicase
70AMAD1_RS060051345051..1346976 [-], 1926ATP-dependent endonuclease
71AMAD1_RS060101347054..1349432 [-], 2379peptidase S8
72AMAD1_RS060151349447..1350418 [-], 972ATP-binding protein
73AMAD1_RS060201350529..1350708 [-], 180hypothetical protein
74AMAD1_RS060251350850..1351452 [-], 603hypothetical protein
75AMAD1_RS060301351820..1352146 [+], 327hypothetical protein
76AMAD1_RS060351352162..1352581 [+], 420single-stranded DNA-binding protein
77bet1352661..1353479 [+], 819phage recombination protein Bet
78AMAD1_RS060451353766..1354782 [+], 1017DNA recombination protein
79AMAD1_RS060501354992..1355951 [+], 960AAA family ATPase
80AMAD1_RS060551355951..1356718 [+], 768hypothetical protein
81AMAD1_RS060601356817..1357770 [+], 954DUF3150 domain-containing protein
82AMAD1_RS060651357832..1358272 [+], 441hypothetical protein
83AMAD1_RS060701358342..1359997 [+], 1656VWA domain-containing protein
84AMAD1_RS060751360083..1360580 [+], 498DNA repair protein RadC
85AMAD1_RS060801360580..1360921 [+], 342hypothetical protein
86AMAD1_RS060851361013..1362080 [+], 1068phage P4 alpha, zinc-binding domain-containing protein
87AMAD1_RS060901362170..1362877 [+], 708hypothetical protein
88AMAD1_RS060951363120..1364037 [-], 918LysR family transcriptional regulator
89AMAD1_RS061001364150..1365289 [+], 1140chromate resistance protein
90AMAD1_RS061051365661..1366605 [+], 945thioredoxin family proteinTraF_F, T4SS component 
91AMAD1_RS061101366608..1367996 [+], 1389TraH family proteinTraH_F, T4SS component 
92AMAD1_RS061151368000..1371569 [+], 3570conjugal transfer protein TraGTraG_F, T4SS component 
93AMAD1_RS061201371602..1372033 [-], 432hypothetical protein
94AMAD1_RS061251372091..1372624 [-], 534transcriptional activator
95AMAD1_RS061301372621..1372920 [-], 300transcriptional activator
96AMAD1_RS061351372917..1373465 [-], 549lytic transglycosylase domain-containing proteinOrf169_F, T4SS component 
97AMAD1_RS061401373452..1374114 [-], 663hypothetical protein
98AMAD1_RS061451374101..1374970 [-], 870hypothetical protein
99AMAD1_RS061501375026..1375277 [-], 252hypothetical protein
100AMAD1_RS061551375395..1376042 [+], 648LexA family transcriptional regulator
101prfC1376320..1377909 [+], 1590peptide chain release factor 3
102AMAD1_RS061651377923..1379653 [+], 1731arginine--tRNA ligase
103AMAD1_RS061701379846..1380412 [+], 567NADPH-dependent oxidoreductase
104AMAD1_RS061751380625..1380828 [+], 204hypothetical protein
105AMAD1_RS061801380936..1382192 [-], 1257DUF2891 domain-containing protein
106AMAD1_RS061851382252..1383295 [-], 1044PLP-dependent cysteine synthase family protein
107AMAD1_RS061901383714..1384928 [+], 1215endonuclease/exonuclease/phosphatase family protein
108AMAD1_RS061951385046..1387889 [+], 2844GGDEF domain-containing protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins101Fasta
(1) Ryan MP; Armshaw P; O'Halloran JA; Pembroke JT (2017). Analysis and comparative genomics of R997, the first SXT/R391 integrative and conjugative element (ICE) of the Indian Sub-Continent. Sci Rep. 7(1):8562. [PubMed:28819148]
(2) Lopez-Perez M; Ramon-Marco N; Rodriguez-Valera F (2017). Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 18(1):36. [PubMed:28056800] in_silico
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU