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I. Information of ICE

ICEberg ID	956
Name	ICEAmaAnS1
Organism	Alteromonas macleodii D7
Size (bp)	117,480
GC content [Genome] (%)	47[44.4]
Insertion site	-
Function	-
Species that ICE can be transferred to	-
Nucleotide Sequence	NZ_CP014323 (partial ICE sequence)
Putative oriT region	-
Putative relaxase	coordinates: 1298253..1300403; Locus tag: AVL55_RS05785;  Family:  MOBH

II. ICE interaction with IME/CIME/

The interaction information of ICEAmaAnS1 is not available.

The graph information of ICEAmaAnS1 components from NZ_CP014323
Incomplete gene list of ICEAmaAnS1 from NZ_CP014323
#	Gene	Coordinates [+/-], size (bp)	Product  (GenBank annotation)	*Reannotation
1	AVL55_RS20225	1256716..1256877 [+], 162	antirestriction protein family protein
2	AVL55_RS05585	1257198..1258049 [+], 852	hypothetical protein
3	AVL55_RS05590	1258042..1258965 [+], 924	nucleotidyl transferase AbiEii/AbiGii toxin family protein
4	AVL55_RS05595	1258980..1259183 [-], 204	hypothetical protein
5	AVL55_RS05600	1259447..1259635 [-], 189	hypothetical protein
6	AVL55_RS05605	1259986..1260306 [+], 321	XRE family transcriptional regulator
7	AVL55_RS05610	1260299..1261528 [+], 1230	type II toxin-antitoxin system HipA family toxin
8	AVL55_RS05615	1261745..1261939 [+], 195	DNA-binding protein
9	AVL55_RS05620	1261951..1263192 [-], 1242	DUF4102 domain-containing protein
10	AVL55_RS05625	1263194..1263463 [-], 270	hypothetical protein
11	AVL55_RS05630	1263466..1264440 [-], 975	rod shape determination protein
12	AVL55_RS20230	1264452..1264658 [+], 207	hypothetical protein
13	AVL55_RS05635	1264905..1265351 [+], 447	hypothetical protein
14	AVL55_RS05640	1265716..1266684 [+], 969	calcium:sodium antiporter
15	AVL55_RS05645	1266753..1267586 [+], 834	mechanosensitive ion channel family protein
16	AVL55_RS05650	1267595..1268605 [-], 1011	translesion error-prone DNA polymerase V subunit UmuC
17	AVL55_RS05655	1269091..1269528 [-], 438	MerR family transcriptional regulator
18	AVL55_RS05660	1269642..1271081 [-], 1440	mercury(II) reductase
19	AVL55_RS05665	1271102..1271521 [-], 420	mercury transporter MerC
20	AVL55_RS05670	1271521..1271805 [-], 285	mercury resistance system periplasmic binding protein MerP
21	AVL55_RS05675	1271852..1272199 [-], 348	mercury transporter
22	AVL55_RS05680	1272390..1272761 [-], 372	Hg(II)-responsive transcriptional regulator
23	AVL55_RS05685	1273112..1273735 [+], 624	serine recombinase
24	AVL55_RS05690	1273858..1274394 [-], 537	hypothetical protein
25	AVL55_RS05695	1274398..1276587 [-], 2190	hypothetical protein
26	AVL55_RS05700	1276599..1279067 [-], 2469	hypothetical protein
27	AVL55_RS05705	1279072..1280481 [-], 1410	site-specific integrase	Integrase
28	AVL55_RS05710	1280634..1280903 [-], 270	DNA polymerase
29	AVL55_RS05715	1280911..1281360 [-], 450	translesion error-prone DNA polymerase V autoproteolytic subunit
30	AVL55_RS05720	1282000..1282905 [+], 906	DNA polymerase III subunit epsilon
31	AVL55_RS05725	1283119..1283418 [+], 300	hypothetical protein
32	AVL55_RS05730	1283736..1284704 [+], 969	WYL domain-containing protein
33	AVL55_RS05735	1284818..1287247 [+], 2430	SAM-dependent DNA methyltransferase
34	AVL55_RS05740	1287247..1288515 [+], 1269	restriction endonuclease subunit S
35	AVL55_RS05745	1288525..1289688 [+], 1164	DUF4268 domain-containing protein
36	AVL55_RS05750	1289703..1292720 [+], 3018	type I restriction endonuclease subunit R
37	AVL55_RS05755	1292743..1293828 [+], 1086	ATP-binding region, ATPase-like protein
38	AVL55_RS05760	1293851..1294402 [+], 552	MarR family transcriptional regulator
39	AVL55_RS05765	1294707..1295075 [+], 369	metal-dependent hydrolase
40	AVL55_RS05770	1295085..1296239 [+], 1155	SAVED domain-containing protein
41	AVL55_RS05775	1296232..1297422 [+], 1191	nucleotidyltransferase
42	AVL55_RS05780	1297423..1298136 [+], 714	hypothetical protein
43	AVL55_RS05785	1298253..1300403 [+], 2151	metal-dependent phosphohydrolase	Relaxase, MOBH Family
44	AVL55_RS05790	1300452..1302275 [+], 1824	hypothetical protein	TraD_F, T4SS component
45	AVL55_RS05795	1302285..1302845 [+], 561	hypothetical protein
46	AVL55_RS05800	1302832..1303467 [+], 636	DUF4400 domain-containing protein
47	AVL55_RS05805	1303494..1304081 [-], 588	hypothetical protein
48	AVL55_RS05810	1304700..1305122 [+], 423	hypothetical protein
49	AVL55_RS05815	1305176..1305502 [-], 327	sel1 repeat family protein
50	AVL55_RS05820	1305545..1305868 [+], 324	hypothetical protein
51	AVL55_RS05825	1305962..1307125 [-], 1164	hypothetical protein
52	AVL55_RS05830	1307250..1307462 [-], 213	hypothetical protein
53	AVL55_RS05835	1307498..1307779 [+], 282	type IV conjugative transfer system protein TraL	TraL_F, T4SS component
54	AVL55_RS05840	1307776..1308402 [+], 627	hypothetical protein	TraE_F, T4SS component
55	AVL55_RS05845	1308386..1309282 [+], 897	hypothetical protein	TraK_F, T4SS component
56	AVL55_RS05850	1309285..1310574 [+], 1290	conjugal transfer protein TraB	TraB_F, T4SS component
57	AVL55_RS05855	1310571..1311221 [+], 651	conjugal transfer protein TraV	TraV_F, T4SS component
58	AVL55_RS05860	1311218..1311607 [+], 390	hypothetical protein	TraA_F, T4SS component
59	AVL55_RS05865	1312016..1314511 [+], 2496	copper-translocating P-type ATPase
60	AVL55_RS05870	1314537..1315001 [+], 465	Cu(I)-responsive transcriptional regulator
61	AVL55_RS05880	1315684..1315902 [+], 219	hypothetical protein
62	AVL55_RS05885	1316587..1317012 [+], 426	Cu(I)-responsive transcriptional regulator
63	AVL55_RS05890	1317775..1318128 [+], 354	ArsR family transcriptional regulator
64	AVL55_RS05900	1319481..1320509 [+], 1029	cation transporter
65	AVL55_RS05905	1320554..1320832 [+], 279	transcriptional regulator
66	AVL55_RS05910	1321429..1324083 [+], 2655	cadmium-translocating P-type ATPase
67	AVL55_RS05920	1325752..1328943 [+], 3192	multidrug efflux RND transporter permease subunit
68	AVL55_RS05925	1328945..1330438 [+], 1494	multidrug transporter
69	AVL55_RS05930	1330950..1331261 [+], 312	AcrB/AcrD/AcrF family protein
70	AVL55_RS05935	1331414..1331635 [+], 222	hydrophobe/amphiphile efflux protein
71	AVL55_RS20255	1331733..1331924 [+], 192	copper chaperone
72	AVL55_RS20260	1332625..1332897 [+], 273	IS66 family insertion sequence hypothetical protein
73	AVL55_RS05950	1333360..1334052 [+], 693	DsbC family protein	TrbB_I, T4SS component
74	AVL55_RS05955	1334052..1336451 [+], 2400	type IV secretion system protein TraC	TraC_F, T4SS component
75	AVL55_RS05960	1336444..1336791 [+], 348	hypothetical protein
76	AVL55_RS05965	1336868..1337287 [+], 420	conjugal transfer pilin signal peptidase TrbI	TraF, T4SS component
77	AVL55_RS05970	1337298..1338422 [+], 1125	plasmid pilus assembly protein	TraW_F, T4SS component
78	AVL55_RS05975	1338406..1339434 [+], 1029	TraU family protein	TraU_F, T4SS component
79	AVL55_RS05980	1339437..1343102 [+], 3666	conjugal transfer protein TraN	TraN_F, T4SS component
80	AVL55_RS05985	1343244..1344920 [-], 1677	ATP-dependent helicase
81	AVL55_RS05990	1344917..1346842 [-], 1926	ATP-dependent endonuclease
82	AVL55_RS05995	1346920..1349298 [-], 2379	peptidase S8
83	AVL55_RS06000	1349313..1350284 [-], 972	ATP-binding protein
84	AVL55_RS06005	1350395..1350574 [-], 180	hypothetical protein
85	AVL55_RS06010	1350716..1351318 [-], 603	hypothetical protein
86	AVL55_RS06015	1351686..1352012 [+], 327	hypothetical protein
87	AVL55_RS06020	1352028..1352447 [+], 420	single-stranded DNA-binding protein
88	AVL55_RS06025	1352527..1353345 [+], 819	phage recombination protein Bet
89	AVL55_RS06030	1353632..1354648 [+], 1017	DNA recombination protein
90	AVL55_RS06035	1354858..1355817 [+], 960	AAA family ATPase
91	AVL55_RS06040	1355817..1356584 [+], 768	hypothetical protein
92	AVL55_RS06045	1356683..1357636 [+], 954	DUF3150 domain-containing protein
93	AVL55_RS06050	1357698..1358138 [+], 441	hypothetical protein
94	AVL55_RS06055	1358208..1359863 [+], 1656	VWA domain-containing protein
95	AVL55_RS06060	1359949..1360446 [+], 498	DNA repair protein RadC
96	AVL55_RS06065	1360446..1360787 [+], 342	hypothetical protein
97	AVL55_RS06070	1360879..1361946 [+], 1068	phage P4 alpha, zinc-binding domain-containing protein
98	AVL55_RS06075	1362036..1362743 [+], 708	hypothetical protein
99	AVL55_RS06080	1362986..1363927 [-], 942	LysR family transcriptional regulator
100	AVL55_RS06085	1364016..1365155 [+], 1140	chromate resistance protein
101	AVL55_RS06090	1365527..1366471 [+], 945	thioredoxin family protein	TraF_F, T4SS component
102	AVL55_RS06095	1366474..1367862 [+], 1389	TraH family protein	TraH_F, T4SS component
103	AVL55_RS06100	1367866..1371435 [+], 3570	conjugal transfer protein TraG	TraG_F, T4SS component
104	AVL55_RS06105	1371468..1371899 [-], 432	hypothetical protein
105	AVL55_RS06110	1371957..1372490 [-], 534	transcriptional activator
106	AVL55_RS06115	1372487..1372786 [-], 300	transcriptional activator
107	AVL55_RS06120	1372783..1373331 [-], 549	lytic transglycosylase domain-containing protein	Orf169_F, T4SS component
108	AVL55_RS06125	1373318..1373980 [-], 663	hypothetical protein
109	AVL55_RS06130	1373967..1374836 [-], 870	hypothetical protein
110	AVL55_RS06135	1374892..1375143 [-], 252	hypothetical protein
111	AVL55_RS06140	1375261..1375908 [+], 648	LexA family transcriptional regulator
112	AVL55_RS06145	1376165..1377754 [+], 1590	peptide chain release factor 3
113	AVL55_RS06150	1377788..1379518 [+], 1731	arginine--tRNA ligase
114	AVL55_RS06155	1379807..1380373 [+], 567	NADPH-dependent oxidoreductase

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	103	Fasta

(1) Lopez-Perez M; Ramon-Marco N; Rodriguez-Valera F (2017). Networking in microbes: conjugative elements and plasmids in the genus Alteromonas. BMC Genomics. 18(1):36. [PubMed:28056800]

in silico analysis literature

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