ICEberg
I. Information of ICE
ICEberg ID953
Name ICEAfe1 This is a predicted ICE derived from literature
OrganismAcidithiobacillus ferrooxidans ATCC 23270
Size (bp)291 kb
GC content [Genome] (%)-
Insertion sitetRNAAla (GGC) gene
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_011761 (ICE sequence without defined boundaries)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEAfe1 is not available.

 

The gene information of ICEAfe1 is not available.
ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Castillo A; Tello M; Ringwald K; Acuna LG; Quatrini R; Orellana O (2017). A DNA segment encoding the anticodon stem/loop of tRNA determines the specific recombination of integrative-conjugative elements in Acidithiobacillus species. RNA Biol. :1-8. [PubMed:29168417]
(2) Alamos P; Tello M; Bustamante P; Gutierrez F; Shmaryahu A; Maldonado J; Levican G; Orellana O (2017). Functionality of tRNAs encoded in a mobile genetic element from an acidophilic bacterium. RNA Biol. :1-10. [PubMed:28708455] in_silico
(3) Bustamante P; Tello M; Orellana O (2014). Toxin-antitoxin systems in the mobile genome of Acidithiobacillus ferrooxidans. PLoS One. 9(11):e112226. [PubMed:25384039] experimental in_silico
(4) Bustamante P; Covarrubias PC; Levican G; Katz A; Tapia P; Holmes D; Quatrini R; Orellana O (2012). ICE Afe 1, an actively excising genetic element from the biomining bacterium Acidithiobacillus ferrooxidans. J Mol Microbiol Biotechnol. 22(6):399-407. [PubMed:23486178] experimental
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU